RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 MIER3Q7Z3K6 550 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 METTL16Q86W50 562 aaKnown RBP11.74□□□□□ -0.53
CCDC40-204ENST00000397545 FBXO11Q86XK2 927 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 MSANTD4Q8NCY6 345 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 JDP2Q8WYK2 163 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 GJD4Q96KN9 370 aaPredicted RBP11.74□□□□□ -0.53
CCDC40-204ENST00000397545 DNAJC17Q9NVM6 304 aaKnown RBP11.74□□□□□ -0.53
CCDC40-204ENST00000397545 MORC2Q9Y6X9 1032 aaPredicted RBP11.74□□□□□ -0.53
CCDC40-204ENST00000397545 CROCCP2Q86T23 111 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 LMNTD2Q8IXW0 634 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 SLC44A5Q8NCS7 719 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 KANSL2Q9H9L4 492 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 MLXIPQ9HAP2 919 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 LY9Q9HBG7 655 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 LARSQ9P2J5 1176 aaKnown RBP11.74□□□□□ -0.53
CCDC40-204ENST00000397545 DAAM1Q9Y4D1 1078 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 ALAS1P13196 640 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 PRDX5P30044 214 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 ICA1Q05084 483 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 CERKLQ49MI3 558 aaPredicted RBP11.74□□□□□ -0.53
CCDC40-204ENST00000397545 KRT26Q7Z3Y9 468 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 CCDC13Q8IYE1 715 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 METTL14Q9HCE5 456 aaKnown RBP11.74□□□□□ -0.53
CCDC40-204ENST00000397545 HPS5Q9UPZ3 1129 aa11.74□□□□□ -0.53
CCDC40-204ENST00000397545 POC1B-GALNT4F8VUJ3 575 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 TXNDC9O14530 226 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 MECOMQ03112 1051 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 GPR162Q16538 588 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 CYP4F22Q6NT55 531 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 SDCCAG8Q86SQ7 713 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-204ENST00000397545 PCIF1Q9H4Z3 704 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 ABCC12Q96J65 1359 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 PLEKHG2Q9H7P9 1386 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 A0A087WUV0 522 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-204ENST00000397545 SFI1A8K8P3 1242 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 TADA3O75528 432 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 XKR9Q5GH70 373 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 VGLL2Q8N8G2 317 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 CCDC110Q8TBZ0 833 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 ZNF526Q8TF50 670 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-204ENST00000397545 SH2D4AQ9H788 454 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 FEZ2Q9UHY8 353 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-204ENST00000397545 RABGAP1Q9Y3P9 1069 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 ENAHQ8N8S7 591 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-204ENST00000397545 RILPQ96NA2 401 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 JPH2Q9BR39 696 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-204ENST00000397545 EMILIN3Q9NT22 766 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 ZNF148Q9UQR1 794 aa11.73□□□□□ -0.53
CCDC40-204ENST00000397545 PGRMC1O00264 195 aaKnown RBP11.72□□□□□ -0.53
CCDC40-204ENST00000397545 NCK2O43639 380 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 CIB2O75838 187 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 GGCXP38435 758 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 FMR1Q06787 632 aaKnown RBP eCLIP11.72□□□□□ -0.53
CCDC40-204ENST00000397545 CCDC38Q502W7 563 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 CCDC62Q6P9F0 684 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 CCDC89Q8N998 374 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 AK8Q96MA6 479 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 CHP1Q99653 195 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 AGXT2Q9BYV1 514 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 CUEDC2Q9H467 287 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 TBK1Q9UHD2 729 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 POTEMA6NI47 508 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 HIP1RO75146 1068 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 CAMTA2O94983 1202 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 PCP11498 1178 aaKnown RBP11.72□□□□□ -0.53
CCDC40-204ENST00000397545 NR1D1P20393 614 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 VSNL1P62760 191 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 ALKBH5Q6P6C2 394 aaKnown RBP11.72□□□□□ -0.53
CCDC40-204ENST00000397545 TMTC3Q6ZXV5 915 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 ILDR1Q86SU0 546 aaPredicted RBP11.72□□□□□ -0.53
CCDC40-204ENST00000397545 PARP2Q9UGN5 583 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 PRPF6O94906 941 aaKnown RBP11.72□□□□□ -0.53
CCDC40-204ENST00000397545 MAP7D1Q3KQU3 841 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 FAM186BQ8IYM0 893 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 NBPF3Q9H094 633 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 EPB41L4AQ9HCS5 686 aaPredicted RBP11.72□□□□□ -0.53
CCDC40-204ENST00000397545 ABCC6O95255 1503 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 HIBCHQ6NVY1 386 aaPredicted RBP11.72□□□□□ -0.53
CCDC40-204ENST00000397545 EFCAB13Q8IY85 973 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 LARGE2Q8N3Y3 721 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 ZNF408Q9H9D4 720 aa11.72□□□□□ -0.53
CCDC40-204ENST00000397545 LGALS16A8MUM7 142 aa11.71□□□□□ -0.53
CCDC40-204ENST00000397545 GBP1P32455 592 aa11.71□□□□□ -0.53
CCDC40-204ENST00000397545 TRIP13Q15645 432 aaPredicted RBP11.71□□□□□ -0.53
CCDC40-204ENST00000397545 TSNAXIP1Q2TAA8 658 aa11.71□□□□□ -0.53
CCDC40-204ENST00000397545 FAM133BQ5BKY9 247 aaKnown RBP11.71□□□□□ -0.53
CCDC40-204ENST00000397545 NFRKBQ6P4R8 1299 aa11.71□□□□□ -0.53
CCDC40-204ENST00000397545 DEFB132Q7Z7B7 95 aa11.71□□□□□ -0.53
CCDC40-204ENST00000397545 ZNF710Q8N1W2 664 aa11.71□□□□□ -0.53
CCDC40-204ENST00000397545 THAP9Q9H5L6 903 aa11.71□□□□□ -0.53
CCDC40-204ENST00000397545 SPATA31A1Q5TZJ5 1347 aa11.71□□□□□ -0.53
CCDC40-204ENST00000397545 TCP10L2B9ZVM9 353 aa11.71□□□□□ -0.54
CCDC40-204ENST00000397545 AFPP02771 609 aaKnown RBP11.71□□□□□ -0.54
CCDC40-204ENST00000397545 SNAP25P60880 206 aa11.71□□□□□ -0.54
CCDC40-204ENST00000397545 NLRX1Q86UT6 975 aa11.71□□□□□ -0.54
CCDC40-204ENST00000397545 RNF10Q8N5U6 811 aaKnown RBP11.71□□□□□ -0.54
CCDC40-204ENST00000397545 CCDC197Q8NCU1 140 aa11.71□□□□□ -0.54
CCDC40-204ENST00000397545 RIC8AQ9NPQ8 531 aa11.71□□□□□ -0.54
CCDC40-204ENST00000397545 GCKP35557 465 aa11.71□□□□□ -0.54
CCDC40-204ENST00000397545 PALM2Q8IXS6 379 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms