RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 HEXIM1O94992 359 aaKnown RBP11□□□□□ -0.65
COL17A1-203ENST00000393211 SNHG28P0DPA3 235 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 MYBP10242 640 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 CXCR5P32302 372 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 HSPA9P38646 679 aaKnown RBP11□□□□□ -0.65
COL17A1-203ENST00000393211 USP8P40818 1118 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 NAP1L1P55209 391 aaKnown RBP11□□□□□ -0.65
COL17A1-203ENST00000393211 GRAPQ13588 217 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 CUL1Q13616 776 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 BICDL1Q6ZP65 573 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 MMS22LQ6ZRQ5 1243 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 MAPKAPK5Q8IW41 473 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 C3orf20Q8ND61 904 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 GRAPLQ8TC17 118 aaPredicted RBP11□□□□□ -0.65
COL17A1-203ENST00000393211 IPO4Q8TEX9 1081 aaKnown RBP11□□□□□ -0.65
COL17A1-203ENST00000393211 CALR3Q96L12 384 aaKnown RBP11□□□□□ -0.65
COL17A1-203ENST00000393211 INPP4AQ96PE3 977 aaPredicted RBP11□□□□□ -0.65
COL17A1-203ENST00000393211 PANK4Q9NVE7 773 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 TMEM59LQ9UK28 342 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11□□□□□ -0.65
COL17A1-203ENST00000393211 MYO3BQ8WXR4 1341 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 PITPNM2Q9BZ72 1349 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 PNMA6FA0A0J9YX94 578 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 NCK2O43639 380 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 SLC37A4O43826 429 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 EDIL3O43854 480 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 ZPR1O75312 459 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 PALMO75781 387 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 GLI1P08151 1106 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 PDHBP11177 359 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 BTDP43251 543 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 CLK2P49760 499 aaKnown RBP10.99□□□□□ -0.65
COL17A1-203ENST00000393211 MRPL12P52815 198 aaKnown RBP10.99□□□□□ -0.65
COL17A1-203ENST00000393211 DIXDC1Q155Q3 683 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 ASIC2Q16515 512 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 SLC4A8Q2Y0W8 1093 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 TEX11Q8IYF3 940 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 ARFGAP2Q8N6H7 521 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 USP38Q8NB14 1042 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 TAF4BQ92750 862 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 ARL8AQ96BM9 186 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 CEP95Q96GE4 821 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 CCDC43Q96MW1 224 aaKnown RBP10.99□□□□□ -0.65
COL17A1-203ENST00000393211 LSM14BQ9BX40 385 aaKnown RBP10.99□□□□□ -0.65
COL17A1-203ENST00000393211 EPN3Q9H201 632 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 YY1AP1Q9H869 796 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 EPB41L5Q9HCM4 733 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 PLCB1Q9NQ66 1216 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 TMEM260Q9NX78 707 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 ANKIB1Q9P2G1 1089 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 STK24Q9Y6E0 443 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 FOCADQ5VW36 1801 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 LTBP4Q8N2S1 1624 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 GAKO14976 1311 aa10.99□□□□□ -0.65
COL17A1-203ENST00000393211 USP17L5A8MUK1 530 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 VGLL3A8MV65 326 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 BHMG1C9JSJ3 638 aaPredicted RBP10.98□□□□□ -0.65
COL17A1-203ENST00000393211 BUB1O43683 1085 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 TDP2O95551 362 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 INPP5BP32019 993 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 CARSP49589 748 aaKnown RBP10.98□□□□□ -0.65
COL17A1-203ENST00000393211 POLR2FP61218 127 aaKnown RBP10.98□□□□□ -0.65
COL17A1-203ENST00000393211 GUCY2DQ02846 1103 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 KLHL30Q0D2K2 578 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 SWT1Q5T5J6 900 aaKnown RBP10.98□□□□□ -0.65
COL17A1-203ENST00000393211 MICALL1Q8N3F8 863 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 ANKRD13CQ8N6S4 541 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 ACTRT1Q8TDG2 376 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 TBC1D5Q92609 795 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 ZBTB9Q96C00 473 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 LRRC45Q96CN5 670 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 ATP6V1G3Q96LB4 118 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 CEP89Q96ST8 783 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 ISCUQ9H1K1 167 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 PLEKHA4Q9H4M7 779 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 TAF1DQ9H5J8 278 aaPredicted RBP10.98□□□□□ -0.65
COL17A1-203ENST00000393211 VAT1LQ9HCJ6 419 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 MTMR4Q9NYA4 1195 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 SAP30BPQ9UHR5 308 aaKnown RBP10.98□□□□□ -0.65
COL17A1-203ENST00000393211 FBXL5Q9UKA1 691 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 NFU1Q9UMS0 254 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 MTMR7Q9Y216 660 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 PCDHA2Q9Y5H9 948 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 IGKV6D-41A0A0C4DH26 115 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 FRMD3A2A2Y4 597 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 POTEMA6NI47 508 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 ZNF233A6NK53 670 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 CCDC188H7C350 402 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 NDUFAB1O14561 156 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 CETN3O15182 167 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 KIAA0754O94854 1291 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 IL1R1P14778 569 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 KLRC1P26715 233 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 USP11P51784 963 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 RPS6KA1Q15418 735 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 KIAA0753Q2KHM9 967 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 MCTP2Q6DN12 878 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.98□□□□□ -0.65
COL17A1-203ENST00000393211 KCNK18Q7Z418 384 aa10.98□□□□□ -0.65
COL17A1-203ENST00000393211 FRMD5Q7Z6J6 570 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms