RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 ERGIC2Q96RQ1 377 aa16.1■□□□□ 0.17
VPS9D1-201ENST00000389386 DUSP9Q99956 384 aaKnown RBP16.1■□□□□ 0.17
VPS9D1-201ENST00000389386 TACC3Q9Y6A5 838 aa16.1■□□□□ 0.17
VPS9D1-201ENST00000389386 ANKRD36CQ5JPF3 1778 aa16.1■□□□□ 0.17
VPS9D1-201ENST00000389386 AHCYL1O43865 530 aa16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 AKR1B10O60218 316 aa16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 KRT2P35908 639 aa16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 MAGOHP61326 146 aaKnown RBP16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 ERVK-9P63128 1117 aa16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 ERMARDQ5T6L9 678 aa16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 RNF10Q8N5U6 811 aaKnown RBP16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 MAGEB6Q8N7X4 407 aa16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 MAGOHBQ96A72 148 aaKnown RBP16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 LRRC45Q96CN5 670 aa16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 LRRC4BQ9NT99 713 aa16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 ZPR1O75312 459 aa16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 HLTFQ14527 1009 aaKnown RBP eCLIP16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 MIIPQ5JXC2 388 aa16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 ZNF772Q68DY9 489 aaPredicted RBP16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 XPO6Q96QU8 1125 aaKnown RBP16.09■□□□□ 0.17
VPS9D1-201ENST00000389386 BUB1O43683 1085 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 IL17AQ16552 155 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 TTC38Q5R3I4 469 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 SPATA5Q8NB90 893 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 CENPTQ96BT3 561 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 INPP4AQ96PE3 977 aaPredicted RBP16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 ZNF317Q96PQ6 595 aaPredicted RBP16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 PHF20Q9BVI0 1012 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 SRP68Q9UHB9 627 aaKnown RBP16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 TAF1P21675 1872 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 MYH7P12883 1935 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 PSMA7O14818 248 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 ABL2P42684 1182 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 ITIH4Q14624 930 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 PIGWQ7Z7B1 504 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 ZSCAN29Q8IWY8 852 aaPredicted RBP16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 CSGALNACT2Q8N6G5 542 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 ANKS4BQ8N8V4 417 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 FANCBQ8NB91 859 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 EEF2KMTQ96G04 330 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 FAM129AQ9BZQ8 928 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 SBF2Q86WG5 1849 aa16.08■□□□□ 0.16
VPS9D1-201ENST00000389386 ABCC12Q96J65 1359 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 PRKAB2O43741 272 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 NTSR2O95665 410 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 FGFR2P21802 821 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 CCND1P24385 295 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 RASSF7Q02833 373 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 CUL1Q13616 776 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 SLC30A9Q6PML9 568 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 MDM1Q8TC05 714 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 FAM210AQ96ND0 272 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 ARMT1Q9H993 441 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 IRAK4Q9NWZ3 460 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 PCDHGC5Q9Y5F6 944 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 COL4A1P02462 1669 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 ASAP2O43150 1006 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 ALX1Q15699 326 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 MIGA1Q8NAN2 632 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 CNOT10Q9H9A5 744 aaKnown RBP16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 AGAP1Q9UPQ3 857 aa16.07■□□□□ 0.16
VPS9D1-201ENST00000389386 SLC5A1P13866 664 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 NQO1P15559 274 aaKnown RBP16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 TNNC1P63316 161 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 CHADLQ6NUI6 762 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 FAM196AQ6ZSG2 479 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 IQCDQ96DY2 449 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 CNOT6LQ96LI5 555 aaKnown RBP16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 ZKSCAN3Q9BRR0 538 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 NOC4LQ9BVI4 516 aaKnown RBP16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 RGS17Q9UGC6 210 aaPredicted RBP16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 TMEM59LQ9UK28 342 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 FBXL5Q9UKA1 691 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 EPHB6O15197 1021 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 MBD4O95243 580 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 ARID4AP29374 1257 aaPredicted RBP16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 MTIF2P46199 727 aaKnown RBP16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 DNA2P51530 1060 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 RBM5P52756 815 aaKnown RBP eCLIP16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 RNASE9P60153 205 aaKnown RBP16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 WTAPQ15007 396 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 PKN1Q16512 942 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 ASTE1Q2TB18 679 aaPredicted RBP16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 ERFEQ4G0M1 354 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 KLHL7Q8IXQ5 586 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 GIMAP8Q8ND71 665 aaPredicted RBP16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 TNFRSF25Q93038 417 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 RNF26Q9BY78 433 aaPredicted RBP16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 ZFATQ9P243 1243 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 MROH5Q6ZUA9 1318 aa16.06■□□□□ 0.16
VPS9D1-201ENST00000389386 BHMG1C9JSJ3 638 aaPredicted RBP16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 KLRC4O43908 158 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 CTNND1O60716 968 aaKnown RBP16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 RTN3O95197 1032 aaPredicted RBP16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 XBP1P17861 261 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 RXRBP28702 533 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 IGHMBP2P38935 993 aaKnown RBP16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 KCNJ2P63252 427 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 CHRNDQ07001 517 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 PDCD2Q16342 344 aaPredicted RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms