RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 NOLC1Q14978 699 aaKnown RBP eCLIP0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 ETFDHQ16134 617 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 RTP2Q5QGT7 225 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 LCE3EQ5T5B0 92 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 ALKBH2Q6NS38 261 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 WWC1Q8IX03 1113 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 LCORLQ8N3X6 602 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 RPL36ALQ969Q0 106 aaKnown RBP0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 YIPF4Q9BSR8 244 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 TRMOQ9BU70 441 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 DUSP26Q9BV47 211 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 VRTNQ9H8Y1 702 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 KIAA1586Q9HCI6 787 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 ANLNQ9NQW6 1124 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 ADAM30Q9UKF2 790 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 TBC1D30Q9Y2I9 924 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 RWDD3Q9Y3V2 267 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 PCDHAC2Q9Y5I4 1007 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 TCF20Q9UGU0 1960 aaKnown RBP0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 IGKV6D-41A0A0C4DH26 115 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 MOSPD3O75425 235 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 PPP1R15AO75807 674 aaPredicted RBP0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 EYA4O95677 639 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 TBC1D8O95759 1140 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 IGKV3-20P01619 116 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 NEFLP07196 543 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 ZNF888P0CJ79 500 aaPredicted RBP0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 COL6A1P12109 1028 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 ZEB1P37275 1124 aaPredicted RBP0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 TUBA4AP68366 448 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 TIGD2Q4W5G0 525 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 MTX3Q5HYI7 312 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 WWC2Q6AWC2 1192 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 Q6ZRM9 215 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 SH2D6Q7Z4S9 175 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 REXO1L1PQ8IX06 675 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 FNBP4Q8N3X1 1017 aaPredicted RBP0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 CCDC74BQ96LY2 380 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 TMEM209Q96SK2 561 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 KRTAP4-1Q9BYQ7 146 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 CXXC1Q9P0U4 656 aaPredicted RBP0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 PUF60Q9UHX1 559 aaKnown RBP0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 NR2E1Q9Y466 385 aa0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 EPN1Q9Y6I3 576 aaPredicted RBP0.72□□□□□ -2.29
RNU6-540P-201ENST00000384622 EME2A4GXA9 379 aaPredicted RBP0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 MATN2O00339 956 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 ENC1O14682 589 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 MPSTP25325 297 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 CTSKP43235 329 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 MAN2A2P49641 1150 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 KRTAP12-2P59991 146 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 RNF4P78317 190 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 EIF2B5Q13144 721 aaKnown RBP0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 CHRNA2Q15822 529 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 RABL3Q5HYI8 236 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 TPTE2Q6XPS3 522 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 FAM126BQ8IXS8 530 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 CMTR2Q8IYT2 770 aaKnown RBP0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 ANKRD35Q8N283 1001 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 KREMEN2Q8NCW0 462 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 SEMA6DQ8NFY4 1073 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 TMEM176AQ96HP8 235 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 CARD11Q9BXL7 1154 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 KATNBL1Q9H079 304 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 AP5M1Q9H0R1 490 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 NELFAQ9H3P2 528 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 MSL2Q9HCI7 577 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 SEMA4GQ9NTN9 838 aa0.71□□□□□ -2.3
RNU6-540P-201ENST00000384622 XDHP47989 1333 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 MYMKA6NI61 221 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 RTL8CO15255 209 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 CPNE3O75131 537 aaKnown RBP0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 NTRK1P04629 796 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 PDE6AP16499 860 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 GBP1P32455 592 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 SEC24CP53992 1094 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 RHDQ02161 417 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 KLF9Q13886 244 aaPredicted RBP0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 C9orf50Q5SZB4 431 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 OTUD3Q5T2D3 398 aaPredicted RBP0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 CCDC62Q6P9F0 684 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 CRTC3Q6UUV7 619 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 BNC2Q6ZN30 1099 aaPredicted RBP0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 GJD3Q8N144 294 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 DNASE2BQ8WZ79 361 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 CEP44Q9C0F1 390 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 KIAA1683Q9H0B3 1180 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 SERHL2Q9H4I8 314 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 SYBUQ9NX95 663 aa0.7□□□□□ -2.3
RNU6-540P-201ENST00000384622 TNFRSF13BO14836 293 aaPredicted RBP0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 FGF10O15520 208 aaPredicted RBP0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 CBFA2T3O75081 653 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 PROP1O75360 226 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 C1QL1O75973 258 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 CKMP06732 381 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 SNRPB2P08579 225 aaKnown RBP0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 CKBP12277 381 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 CXCR3P49682 368 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 DDR1Q08345 913 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 FOXI1Q12951 378 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms