RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CEP112Q8N8E3 955 aa14.85□□□□□ -0.03
CCDC3-202ENST00000378839 MSANTD4Q8NCY6 345 aa14.85□□□□□ -0.03
CCDC3-202ENST00000378839 RHOXF2Q9BQY4 288 aa14.85□□□□□ -0.03
CCDC3-202ENST00000378839 MMRN2Q9H8L6 949 aa14.85□□□□□ -0.03
CCDC3-202ENST00000378839 ARGLU1Q9NWB6 273 aaPredicted RBP14.85□□□□□ -0.03
CCDC3-202ENST00000378839 ATRNL1Q5VV63 1379 aa14.84□□□□□ -0.03
CCDC3-202ENST00000378839 ZNF185O15231 689 aa14.84□□□□□ -0.03
CCDC3-202ENST00000378839 PSMD2Q13200 908 aa14.84□□□□□ -0.03
CCDC3-202ENST00000378839 FKBP15Q5T1M5 1219 aa14.84□□□□□ -0.03
CCDC3-202ENST00000378839 ZNF662Q6ZS27 426 aa14.84□□□□□ -0.03
CCDC3-202ENST00000378839 GPBP1Q86WP2 473 aa14.84□□□□□ -0.03
CCDC3-202ENST00000378839 ACER1Q8TDN7 264 aa14.84□□□□□ -0.03
CCDC3-202ENST00000378839 GMCL1Q96IK5 515 aa14.84□□□□□ -0.03
CCDC3-202ENST00000378839 MMS19Q96T76 1030 aa14.84□□□□□ -0.03
CCDC3-202ENST00000378839 GTPBP4Q9BZE4 634 aaKnown RBP14.84□□□□□ -0.03
CCDC3-202ENST00000378839 ZCCHC17Q9NP64 241 aaKnown RBP14.84□□□□□ -0.03
CCDC3-202ENST00000378839 CDK17Q00537 523 aa14.84□□□□□ -0.03
CCDC3-202ENST00000378839 SYDE2Q5VT97 1194 aa14.84□□□□□ -0.03
CCDC3-202ENST00000378839 SALL4Q9UJQ4 1053 aa14.84□□□□□ -0.03
CCDC3-202ENST00000378839 RAB21Q9UL25 225 aa14.84□□□□□ -0.03
CCDC3-202ENST00000378839 PDE2AO00408 941 aaPredicted RBP14.83□□□□□ -0.03
CCDC3-202ENST00000378839 NPM3O75607 178 aaKnown RBP14.83□□□□□ -0.03
CCDC3-202ENST00000378839 VSNL1P62760 191 aa14.83□□□□□ -0.03
CCDC3-202ENST00000378839 LONRF2Q1L5Z9 754 aa14.83□□□□□ -0.03
CCDC3-202ENST00000378839 AMNQ9BXJ7 453 aa14.83□□□□□ -0.03
CCDC3-202ENST00000378839 MACROD2A1Z1Q3 448 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 FRMD3A2A2Y4 597 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 EIF4A3P38919 411 aaKnown RBP14.83□□□□□ -0.04
CCDC3-202ENST00000378839 MMP14P50281 582 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 TSR1Q2NL82 804 aaKnown RBP14.83□□□□□ -0.04
CCDC3-202ENST00000378839 BEND6Q5SZJ8 279 aaPredicted RBP14.83□□□□□ -0.04
CCDC3-202ENST00000378839 PAPD7Q5XG87 772 aaKnown RBP14.83□□□□□ -0.04
CCDC3-202ENST00000378839 RRAGAQ7L523 313 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 FBXO11Q86XK2 927 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 CCDC170Q8IYT3 715 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 CSRNP1Q96S65 589 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 MLXIPQ9HAP2 919 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 CLRN2A0PK11 232 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 TCP10L2B9ZVM9 353 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 EML1O00423 815 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 MSH4O15457 936 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 TLR2O60603 784 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 GABPB1Q06547 395 aaPredicted RBP14.83□□□□□ -0.04
CCDC3-202ENST00000378839 WHAMMP3Q1A5X7 153 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 HGSNATQ68CP4 663 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 KIAA1328Q86T90 577 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 VAV3Q9UKW4 847 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 PRR12Q9ULL5 1215 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 CAPN6Q9Y6Q1 641 aa14.83□□□□□ -0.04
CCDC3-202ENST00000378839 TRAF5O00463 557 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 C21orf2O43822 256 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 BMP3P12645 472 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 HMGB2P26583 209 aaKnown RBP14.82□□□□□ -0.04
CCDC3-202ENST00000378839 ASTE1Q2TB18 679 aaPredicted RBP14.82□□□□□ -0.04
CCDC3-202ENST00000378839 Q4G0T1 1027 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 FLAD1Q8NFF5 587 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 ZFP91Q96JP5 570 aaPredicted RBP14.82□□□□□ -0.04
CCDC3-202ENST00000378839 ABCB11O95342 1321 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 RSPH10B2B2RC85 870 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 RSPH10BP0C881 870 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 CYLC1P35663 651 aaPredicted RBP14.82□□□□□ -0.04
CCDC3-202ENST00000378839 SREBF1P36956 1147 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 KRT83P78385 493 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 PABPC4Q13310 644 aaKnown RBP eCLIP14.82□□□□□ -0.04
CCDC3-202ENST00000378839 GIT2Q14161 759 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 HERC4Q5GLZ8 1057 aaPredicted RBP14.82□□□□□ -0.04
CCDC3-202ENST00000378839 NT5C3AQ9H0P0 336 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 IKZF4Q9H2S9 585 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 ABCB6Q9NP58 842 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 COL4A3BPQ9Y5P4 624 aa14.82□□□□□ -0.04
CCDC3-202ENST00000378839 IKQ13123 557 aaPredicted RBP14.81□□□□□ -0.04
CCDC3-202ENST00000378839 AP3B2Q13367 1082 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 BTNL9Q6UXG8 535 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 CAPZA3Q96KX2 299 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 CRACR2AQ9BSW2 395 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 TRIM34Q9BYJ4 488 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 ARFGAP3Q9NP61 516 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 TMEM51Q9NW97 253 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 ZNHIT6Q9NWK9 470 aaKnown RBP14.81□□□□□ -0.04
CCDC3-202ENST00000378839 PCDHA13Q9Y5I0 950 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 KDM3AQ9Y4C1 1321 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 CTAGE15A4D2H0 777 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 CCDC151A5D8V7 595 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 LCA5LO95447 670 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 CTAGE8P0CG41 777 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 KIF11P52732 1056 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 VAV2P52735 878 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 FKBP3Q00688 224 aaKnown RBP14.81□□□□□ -0.04
CCDC3-202ENST00000378839 CYP4A11Q02928 519 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 RBM26Q5T8P6 1007 aaKnown RBP14.81□□□□□ -0.04
CCDC3-202ENST00000378839 CTAGE6Q86UF2 777 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 CTAGE4Q8IX94 777 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 CCDC42Q96M95 316 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 EMILIN3Q9NT22 766 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 IGLV3-22A0A075B6J6 115 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 H3BQF6 201 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 MAP2K7O14733 419 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 ZBTB39O15060 712 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 ENTPD3O75355 529 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 GFPT1Q06210 699 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms