RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 DHX9Q08211 1270 aaKnown RBP17.41■□□□□ 0.38
CKAP4-201ENST00000378026 KLHL30Q0D2K2 578 aa17.41■□□□□ 0.38
CKAP4-201ENST00000378026 FAM133BQ5BKY9 247 aaKnown RBP17.41■□□□□ 0.38
CKAP4-201ENST00000378026 TATDN2Q93075 761 aa17.41■□□□□ 0.38
CKAP4-201ENST00000378026 SELENOSQ9BQE4 189 aa17.41■□□□□ 0.38
CKAP4-201ENST00000378026 JAG2Q9Y219 1238 aa17.41■□□□□ 0.38
CKAP4-201ENST00000378026 SSU72P8A0A1W2PR75 194 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 TRAF5O00463 557 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 MRPL12P52815 198 aaKnown RBP17.4■□□□□ 0.38
CKAP4-201ENST00000378026 LRIG3Q6UXM1 1119 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 SV2BQ7L1I2 683 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 TRIM6Q9C030 488 aaPredicted RBP17.4■□□□□ 0.38
CKAP4-201ENST00000378026 LUC7LQ9NQ29 371 aaKnown RBP17.4■□□□□ 0.38
CKAP4-201ENST00000378026 PNMA2Q9UL42 364 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 ATP8A1Q9Y2Q0 1164 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 ATP6V1G2O95670 118 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 SERPING1P05155 500 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 CHRNDQ07001 517 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 CCT6BQ92526 530 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 IQCDQ96DY2 449 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 CALML4Q96GE6 196 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 UIMC1Q96RL1 719 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 GOPCQ9HD26 462 aa17.4■□□□□ 0.38
CKAP4-201ENST00000378026 SLC8A1P32418 973 aa17.39■□□□□ 0.38
CKAP4-201ENST00000378026 IGHMBP2P38935 993 aaKnown RBP17.39■□□□□ 0.38
CKAP4-201ENST00000378026 PIGBQ92521 554 aa17.39■□□□□ 0.38
CKAP4-201ENST00000378026 KRIT1O00522 736 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 BIRC3Q13489 604 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 CRYMQ14894 314 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 ADAT2Q7Z6V5 191 aaKnown RBP17.39■□□□□ 0.37
CKAP4-201ENST00000378026 DZIP3Q86Y13 1208 aaKnown RBP17.39■□□□□ 0.37
CKAP4-201ENST00000378026 PNMA1Q8ND90 353 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 ANKS1AQ92625 1134 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 CDK5RAP3Q96JB5 506 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 PRDM11Q9NQV5 511 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 F8W031 263 aaPredicted RBP17.39■□□□□ 0.37
CKAP4-201ENST00000378026 TTI1O43156 1089 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 NOL4O94818 638 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 DRD4P21917 467 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 SATB1Q01826 763 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 XRCC4Q13426 336 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 TMED8Q6PL24 325 aaPredicted RBP17.39■□□□□ 0.37
CKAP4-201ENST00000378026 NELFCDQ8IXH7 590 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 UHMK1Q8TAS1 419 aaKnown RBP17.39■□□□□ 0.37
CKAP4-201ENST00000378026 NSMCE1Q8WV22 266 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 MMTAG2Q9BU76 263 aaKnown RBP17.39■□□□□ 0.37
CKAP4-201ENST00000378026 VAT1LQ9HCJ6 419 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 ATP6V0A2Q9Y487 856 aa17.39■□□□□ 0.37
CKAP4-201ENST00000378026 A0A0G2JS52 829 aa17.38■□□□□ 0.37
CKAP4-201ENST00000378026 TRIM37O94972 964 aa17.38■□□□□ 0.37
CKAP4-201ENST00000378026 TFAP4Q01664 338 aa17.38■□□□□ 0.37
CKAP4-201ENST00000378026 SLC18A3Q16572 532 aa17.38■□□□□ 0.37
CKAP4-201ENST00000378026 RCSD1Q6JBY9 416 aa17.38■□□□□ 0.37
CKAP4-201ENST00000378026 C1orf131Q8NDD1 294 aaKnown RBP17.38■□□□□ 0.37
CKAP4-201ENST00000378026 PCDHGC5Q9Y5F6 944 aa17.38■□□□□ 0.37
CKAP4-201ENST00000378026 PEX19P40855 299 aa17.38■□□□□ 0.37
CKAP4-201ENST00000378026 SUSD4Q5VX71 490 aa17.38■□□□□ 0.37
CKAP4-201ENST00000378026 CCDC63Q8NA47 563 aa17.38■□□□□ 0.37
CKAP4-201ENST00000378026 RSRC1Q96IZ7 334 aaKnown RBP17.38■□□□□ 0.37
CKAP4-201ENST00000378026 CUEDC2Q9H467 287 aa17.38■□□□□ 0.37
CKAP4-201ENST00000378026 ATP6V0A4Q9HBG4 840 aa17.38■□□□□ 0.37
CKAP4-201ENST00000378026 ORC4O43929 436 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 MGRN1O60291 552 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 KIF4AO95239 1232 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 FGFR1OPO95684 399 aaKnown RBP17.37■□□□□ 0.37
CKAP4-201ENST00000378026 CUL1Q13616 776 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 CCDC197Q8NCU1 140 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 ZNF384Q8TF68 577 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 CHMP6Q96FZ7 201 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 PSMD1Q99460 953 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 NOC2LQ9Y3T9 749 aaKnown RBP17.37■□□□□ 0.37
CKAP4-201ENST00000378026 EIF4E1BA6NMX2 242 aaKnown RBP17.37■□□□□ 0.37
CKAP4-201ENST00000378026 CYTH3O43739 400 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 CAND2O75155 1236 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 NAPAP54920 295 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 SLC35G1Q2M3R5 365 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 TLDC1Q6P9B6 456 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 LRRC55Q6ZSA7 311 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 CUL5Q93034 780 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 TRIM51Q9BSJ1 452 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 BRIP1Q9BX63 1249 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 CEP72Q9P209 647 aa17.37■□□□□ 0.37
CKAP4-201ENST00000378026 USP17L3A6NCW0 530 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 USP17L4A6NCW7 530 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 CCT8L1PA6NM43 557 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 M0R2N6 131 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 MYBP10242 640 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 IL2RBP14784 551 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 COPB2P35606 906 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 IFNAR2P48551 515 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 USP17L1Q7RTZ2 530 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 METTL13Q8N6R0 699 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 TSG101Q99816 390 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 ELAC2Q9BQ52 826 aaKnown RBP17.36■□□□□ 0.37
CKAP4-201ENST00000378026 STX8Q9UNK0 236 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.36■□□□□ 0.37
CKAP4-201ENST00000378026 SRRM3A6NNA2 597 aaPredicted RBP17.36■□□□□ 0.37
CKAP4-201ENST00000378026 PPP1R2P41236 205 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 DYNLL2Q96FJ2 89 aa17.36■□□□□ 0.37
CKAP4-201ENST00000378026 XPO6Q96QU8 1125 aaKnown RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms