RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CYP11B2P19099 503 aa24.12■■□□□ 1.45
SHMT1-202ENST00000352886 OAS2P29728 719 aaKnown RBP24.12■■□□□ 1.45
SHMT1-202ENST00000352886 KIF11P52732 1056 aa24.12■■□□□ 1.45
SHMT1-202ENST00000352886 CCDC40Q4G0X9 1142 aa24.12■■□□□ 1.45
SHMT1-202ENST00000352886 HERC4Q5GLZ8 1057 aaPredicted RBP24.12■■□□□ 1.45
SHMT1-202ENST00000352886 MOXD1Q6UVY6 613 aa24.12■■□□□ 1.45
SHMT1-202ENST00000352886 GPIHBP1Q8IV16 184 aa24.12■■□□□ 1.45
SHMT1-202ENST00000352886 CRYGNQ8WXF5 182 aa24.12■■□□□ 1.45
SHMT1-202ENST00000352886 SECISBP2LQ93073 1101 aaKnown RBP24.12■■□□□ 1.45
SHMT1-202ENST00000352886 IFIH1Q9BYX4 1025 aaKnown RBP24.12■■□□□ 1.45
SHMT1-202ENST00000352886 DEF6Q9H4E7 631 aa24.12■■□□□ 1.45
SHMT1-202ENST00000352886 ABCB6Q9NP58 842 aa24.12■■□□□ 1.45
SHMT1-202ENST00000352886 MAP2K7O14733 419 aa24.12■■□□□ 1.45
SHMT1-202ENST00000352886 GMCL1P1Q8NEA9 526 aa24.12■■□□□ 1.45
SHMT1-202ENST00000352886 NEK11Q8NG66 645 aa24.12■■□□□ 1.45
SHMT1-202ENST00000352886 BAP1Q92560 729 aa24.12■■□□□ 1.45
SHMT1-202ENST00000352886 MMS19Q96T76 1030 aa24.12■■□□□ 1.45
SHMT1-202ENST00000352886 TDRD3Q9H7E2 651 aaKnown RBP24.12■■□□□ 1.45
SHMT1-202ENST00000352886 POTEFA5A3E0 1075 aa24.11■■□□□ 1.45
SHMT1-202ENST00000352886 H0YIN7 160 aa24.11■■□□□ 1.45
SHMT1-202ENST00000352886 NPM3O75607 178 aaKnown RBP24.11■■□□□ 1.45
SHMT1-202ENST00000352886 POTEIP0CG38 1075 aa24.11■■□□□ 1.45
SHMT1-202ENST00000352886 EIF4A3P38919 411 aaKnown RBP24.11■■□□□ 1.45
SHMT1-202ENST00000352886 POTEGQ6S5H5 508 aa24.11■■□□□ 1.45
SHMT1-202ENST00000352886 POTEEQ6S8J3 1075 aa24.11■■□□□ 1.45
SHMT1-202ENST00000352886 FBXO11Q86XK2 927 aa24.11■■□□□ 1.45
SHMT1-202ENST00000352886 ETNPPLQ8TBG4 499 aa24.11■■□□□ 1.45
SHMT1-202ENST00000352886 SMCR8Q8TEV9 937 aaPredicted RBP24.11■■□□□ 1.45
SHMT1-202ENST00000352886 CAPZA3Q96KX2 299 aa24.11■■□□□ 1.45
SHMT1-202ENST00000352886 PCDHA13Q9Y5I0 950 aa24.11■■□□□ 1.45
SHMT1-202ENST00000352886 KCNMA1Q12791 1236 aa24.11■■□□□ 1.45
SHMT1-202ENST00000352886 HAUS3Q68CZ6 603 aa24.11■■□□□ 1.45
SHMT1-202ENST00000352886 CACNA2D4Q7Z3S7 1137 aa24.11■■□□□ 1.45
SHMT1-202ENST00000352886 GMCL1Q96IK5 515 aa24.11■■□□□ 1.45
SHMT1-202ENST00000352886 MYH10P35580 1976 aa24.1■■□□□ 1.45
SHMT1-202ENST00000352886 ANO9A1A5B4 782 aa24.1■■□□□ 1.45
SHMT1-202ENST00000352886 SLC26A4O43511 780 aa24.1■■□□□ 1.45
SHMT1-202ENST00000352886 USO1O60763 962 aaKnown RBP24.1■■□□□ 1.45
SHMT1-202ENST00000352886 KRT18P05783 430 aaKnown RBP24.1■■□□□ 1.45
SHMT1-202ENST00000352886 SPIRE1Q08AE8 756 aa24.1■■□□□ 1.45
SHMT1-202ENST00000352886 AOC3Q16853 763 aa24.1■■□□□ 1.45
SHMT1-202ENST00000352886 AKR1B10O60218 316 aa24.1■■□□□ 1.45
SHMT1-202ENST00000352886 TAL1P17542 331 aaPredicted RBP24.1■■□□□ 1.45
SHMT1-202ENST00000352886 SLC12A3P55017 1021 aa24.1■■□□□ 1.45
SHMT1-202ENST00000352886 JAG1P78504 1218 aa24.1■■□□□ 1.45
SHMT1-202ENST00000352886 SYDE2Q5VT97 1194 aa24.1■■□□□ 1.45
SHMT1-202ENST00000352886 CATSPER3Q86XQ3 398 aa24.1■■□□□ 1.45
SHMT1-202ENST00000352886 SCFD1Q8WVM8 642 aa24.1■■□□□ 1.45
SHMT1-202ENST00000352886 CEP63Q96MT8 703 aa24.1■■□□□ 1.45
SHMT1-202ENST00000352886 ZHX3Q9H4I2 956 aa24.1■■□□□ 1.45
SHMT1-202ENST00000352886 SPDYE3A6NKU9 549 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 GH2P01242 217 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 FAM193AP78312 1265 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 ARSHQ5FYA8 562 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 HDXQ7Z353 690 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 SUGCTQ9HAC7 445 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 ZCCHC17Q9NP64 241 aaKnown RBP24.09■■□□□ 1.45
SHMT1-202ENST00000352886 EMILIN3Q9NT22 766 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 L1RE1Q9UN81 338 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 LCA5LO95447 670 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 TUBBP07437 444 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 STYK1Q6J9G0 422 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 PDXDC1Q6P996 788 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 SH2D4AQ9H788 454 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 JADE2Q9NQC1 790 aa24.09■■□□□ 1.45
SHMT1-202ENST00000352886 RNF216Q9NWF9 866 aaPredicted RBP24.09■■□□□ 1.45
SHMT1-202ENST00000352886 FAM86B1E9PN63 330 aa24.08■■□□□ 1.45
SHMT1-202ENST00000352886 FAM86B2P0C5J1 330 aa24.08■■□□□ 1.45
SHMT1-202ENST00000352886 Q4G0T1 1027 aa24.08■■□□□ 1.45
SHMT1-202ENST00000352886 LENG9Q96B70 501 aa24.08■■□□□ 1.45
SHMT1-202ENST00000352886 KCTD10Q9H3F6 313 aa24.08■■□□□ 1.45
SHMT1-202ENST00000352886 CAPN6Q9Y6Q1 641 aa24.08■■□□□ 1.45
SHMT1-202ENST00000352886 SMCHD1A6NHR9 2005 aa24.08■■□□□ 1.44
SHMT1-202ENST00000352886 FRMD3A2A2Y4 597 aa24.08■■□□□ 1.44
SHMT1-202ENST00000352886 ZNF185O15231 689 aa24.08■■□□□ 1.44
SHMT1-202ENST00000352886 BMP3P12645 472 aa24.08■■□□□ 1.44
SHMT1-202ENST00000352886 CKAP4Q07065 602 aaKnown RBP24.08■■□□□ 1.44
SHMT1-202ENST00000352886 RBM26Q5T8P6 1007 aaKnown RBP24.08■■□□□ 1.44
SHMT1-202ENST00000352886 MCTP2Q6DN12 878 aa24.08■■□□□ 1.44
SHMT1-202ENST00000352886 TRIM58Q8NG06 486 aa24.08■■□□□ 1.44
SHMT1-202ENST00000352886 EDEM3Q9BZQ6 932 aa24.08■■□□□ 1.44
SHMT1-202ENST00000352886 GBP3Q9H0R5 595 aa24.08■■□□□ 1.44
SHMT1-202ENST00000352886 NLRC4Q9NPP4 1024 aa24.08■■□□□ 1.44
SHMT1-202ENST00000352886 PITPNM2Q9BZ72 1349 aa24.07■■□□□ 1.44
SHMT1-202ENST00000352886 MEIS1O00470 390 aa24.07■■□□□ 1.44
SHMT1-202ENST00000352886 TBX3O15119 743 aa24.07■■□□□ 1.44
SHMT1-202ENST00000352886 GNA14O95837 355 aa24.07■■□□□ 1.44
SHMT1-202ENST00000352886 CHRNA5P30532 468 aa24.07■■□□□ 1.44
SHMT1-202ENST00000352886 SREBF1P36956 1147 aa24.07■■□□□ 1.44
SHMT1-202ENST00000352886 PSMC6P62333 389 aa24.07■■□□□ 1.44
SHMT1-202ENST00000352886 WDR93Q6P2C0 686 aa24.07■■□□□ 1.44
SHMT1-202ENST00000352886 ERMNQ8TAM6 284 aa24.07■■□□□ 1.44
SHMT1-202ENST00000352886 MLXIPQ9HAP2 919 aa24.07■■□□□ 1.44
SHMT1-202ENST00000352886 ATRNL1Q5VV63 1379 aa24.07■■□□□ 1.44
SHMT1-202ENST00000352886 USP14P54578 494 aa24.06■■□□□ 1.44
SHMT1-202ENST00000352886 UTP18Q9Y5J1 556 aaKnown RBP eCLIP24.06■■□□□ 1.44
SHMT1-202ENST00000352886 TACC1O75410 805 aa24.06■■□□□ 1.44
SHMT1-202ENST00000352886 FOSP01100 380 aaPredicted RBP24.06■■□□□ 1.44
SHMT1-202ENST00000352886 HOXA13P31271 388 aaPredicted RBP24.06■■□□□ 1.44
SHMT1-202ENST00000352886 PABPC4Q13310 644 aaKnown RBP eCLIP24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms