RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 RWDD2AQ9UIY3 292 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 SUFUQ9UMX1 484 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 MRFAP1Q9Y605 127 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.48□□□□□ -0.41
VPS39-201ENST00000318006 HSPA6P17066 643 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 MX2P20592 715 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 IRX1P78414 480 aaPredicted RBP12.48□□□□□ -0.41
VPS39-201ENST00000318006 TCP11X2Q5H9J9 407 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 C6orf118Q5T5N4 469 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 TRIM42Q8IWZ5 723 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 CXorf38Q8TB03 319 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 FMO2Q99518 471 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 KLC4Q9NSK0 619 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 PLAAQ9Y263 795 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 COL4A3BPQ9Y5P4 624 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 TRIM66O15016 1216 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 ZNF658Q5TYW1 1059 aaPredicted RBP12.48□□□□□ -0.41
VPS39-201ENST00000318006 AIFM3Q96NN9 605 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 RFX7Q2KHR2 1363 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 RPS6KA4O75676 772 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 CYP2E1P05181 493 aaPredicted RBP12.47□□□□□ -0.41
VPS39-201ENST00000318006 MYO1EQ12965 1108 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 GNPTABQ3T906 1256 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 DCAF15Q66K64 600 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 SMYD4Q8IYR2 804 aaPredicted RBP12.47□□□□□ -0.41
VPS39-201ENST00000318006 P2RX5Q93086 422 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 ISCA1Q9BUE6 129 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.47□□□□□ -0.41
VPS39-201ENST00000318006 SCINQ9Y6U3 715 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 IQGAP1P46940 1657 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 TESPA1A2RU30 521 aaPredicted RBP12.47□□□□□ -0.41
VPS39-201ENST00000318006 GMNCA6NCL1 334 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 FTCDO95954 541 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 LMNB1P20700 586 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 CYP2J2P51589 502 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 ADCY2Q08462 1091 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 CRB1P82279 1406 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 MAPK13O15264 365 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 COBLO75128 1261 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 TADA3O75528 432 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 SLCO1A2P46721 670 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 NT5C2P49902 561 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 ADAM9Q13443 819 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 MAN2A1Q16706 1144 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 NUGGCQ68CJ6 796 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 MCF2L2Q86YR7 1114 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 BPIFA3Q9BQP9 254 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 BRIP1Q9BX63 1249 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 KANSL2Q9H9L4 492 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 PNMA2Q9UL42 364 aa12.47□□□□□ -0.41
VPS39-201ENST00000318006 ANO9A1A5B4 782 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 hCG_1984214I3L0E3 225 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 PDE6CP51160 858 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 LMNB2Q03252 620 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 EXOC3L4Q17RC7 722 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 FAM178BQ8IXR5 827 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 SYNE4Q8N205 404 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 ZNF713Q8N859 430 aaPredicted RBP12.46□□□□□ -0.41
VPS39-201ENST00000318006 STOML1Q9UBI4 398 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 PCDHA13Q9Y5I0 950 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 ATP5HO75947 161 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 MMEP08473 750 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 BRDTQ58F21 947 aaPredicted RBP12.46□□□□□ -0.41
VPS39-201ENST00000318006 KRT26Q7Z3Y9 468 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 LARP4BQ92615 738 aaKnown RBP12.46□□□□□ -0.41
VPS39-201ENST00000318006 DYNLL2Q96FJ2 89 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 EEF2KMTQ96G04 330 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 DRC3Q9H069 523 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 ZMYND12Q9H0C1 365 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 BCS1LQ9Y276 419 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 PTPN22Q9Y2R2 807 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 DIP2BQ9P265 1576 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 CYP19A1P11511 503 aaPredicted RBP12.46□□□□□ -0.41
VPS39-201ENST00000318006 EIF4A3P38919 411 aaKnown RBP12.46□□□□□ -0.41
VPS39-201ENST00000318006 ARHGEF16Q5VV41 709 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 NXNQ6DKJ4 435 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 NLRP14Q86W24 1093 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 CSRNP1Q96S65 589 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 TEKT3Q9BXF9 490 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 ST7Q9NRC1 585 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 ZNF148Q9UQR1 794 aa12.46□□□□□ -0.41
VPS39-201ENST00000318006 SRPRBQ9Y5M8 271 aaKnown RBP12.46□□□□□ -0.41
VPS39-201ENST00000318006 DLC1Q96QB1 1528 aa12.46□□□□□ -0.42
VPS39-201ENST00000318006 N4BP1O75113 896 aaKnown RBP12.46□□□□□ -0.42
VPS39-201ENST00000318006 CYP27A1Q02318 531 aa12.46□□□□□ -0.42
VPS39-201ENST00000318006 ZNF449Q6P9G9 518 aa12.46□□□□□ -0.42
VPS39-201ENST00000318006 ZC3H18Q86VM9 953 aaKnown RBP12.46□□□□□ -0.42
VPS39-201ENST00000318006 NME8Q8N427 588 aa12.46□□□□□ -0.42
VPS39-201ENST00000318006 PIGSQ96S52 555 aa12.46□□□□□ -0.42
VPS39-201ENST00000318006 EPC1Q9H2F5 836 aa12.46□□□□□ -0.42
VPS39-201ENST00000318006 KIAA1024Q9UPX6 916 aa12.46□□□□□ -0.42
VPS39-201ENST00000318006 SETD1BQ9UPS6 1966 aaKnown RBP12.45□□□□□ -0.42
VPS39-201ENST00000318006 FRMPD1Q5SYB0 1578 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 GCFC2P16383 781 aaKnown RBP12.45□□□□□ -0.42
VPS39-201ENST00000318006 PPP2R5DQ14738 602 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 TBCKQ8TEA7 893 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 ZNF408Q9H9D4 720 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 DBNDD1Q9H9R9 158 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 GINS2Q9Y248 185 aa12.45□□□□□ -0.42
VPS39-201ENST00000318006 AGLP35573 1532 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms