RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TSEN34Q9BSV6 310 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 UPF3AQ9H1J1 476 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 SLC6A15Q9H2J7 730 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 TCP11L1Q9NUJ3 509 aa8.22□□□□□ -1.09
LIMCH1-201ENST00000313860 ECE2O60344 883 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 LCP1P13796 627 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 KCNA2P16389 499 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 S100A2P29034 98 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 EPC2Q52LR7 807 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 HS1BP3Q53T59 392 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 ARMC3Q5W041 872 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 ENKURQ8TC29 256 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 VPS11Q9H270 941 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 IMPACTQ9P2X3 320 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 RNF103-CHMP3A0A140T963 221 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 M0R3G1 203 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 MYO1CO00159 1063 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 OR7A10O76100 309 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 OATP04181 439 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 GCFC2P16383 781 aaKnown RBP8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 ETV5P41161 510 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 CSE1LP55060 971 aaKnown RBP8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 RPS6P62753 249 aaKnown RBP8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 ZSCAN23Q3MJ62 389 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 ANO5Q75V66 913 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 CHERPQ8IWX8 916 aaKnown RBP8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC36Q8IYA8 594 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 OR8H2Q8N162 312 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 C1orf131Q8NDD1 294 aaKnown RBP8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 DDI1Q8WTU0 396 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 C8orf76Q96K31 380 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 EHD2Q9NZN4 543 aa8.21□□□□□ -1.09
LIMCH1-201ENST00000313860 MINDY4BA8MYZ0 360 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 MMEP08473 750 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 HADHAP40939 763 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 BTKQ06187 659 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 HECTD3Q5T447 861 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 C1orf189Q5VU69 101 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 GIMAP6Q6P9H5 292 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 FAM133AQ8N9E0 248 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 MTRQ99707 1265 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 FGFR1OP2Q9NVK5 253 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 VILLO15195 856 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 ARIH2O95376 493 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 TRIM49P0CI25 452 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 TRIM49CP0CI26 452 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 MYBL1P10243 752 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 FSHRP23945 695 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 ABL2P42684 1182 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 CYP4A11Q02928 519 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 RALGDSQ12967 914 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 ANO6Q4KMQ2 910 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 CYP4A22Q5TCH4 519 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 VN1R5Q7Z5H4 357 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 CCDC84Q86UT8 332 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 CAPSLQ8WWF8 208 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 SNX19Q92543 992 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 OLFM3Q96PB7 478 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 CRNKL1Q9BZJ0 848 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 FAM50BQ9Y247 325 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 USP16Q9Y5T5 823 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 C5orf51A6NDU8 294 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 STX7O15400 261 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 ANP32DO95626 131 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 ALFQ53S48 1182 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 DCAF17Q5H9S7 520 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 TMEM63BQ5T3F8 832 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 NLRP13Q86W25 1043 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 AOPEPQ8N6M6 819 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 ZNF555Q8NEP9 628 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 SCG3Q8WXD2 468 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 MTBPQ96DY7 904 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 OSBPL11Q9BXB4 747 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 BEX2Q9BXY8 128 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 RAB17Q9H0T7 212 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 PANK3Q9H999 370 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 C12orf4Q9NQ89 552 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 RGS17Q9UGC6 210 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 TMCO1Q9UM00 188 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 PEG3Q9GZU2 1588 aa8.21□□□□□ -1.1
LIMCH1-201ENST00000313860 RAPGEF2Q9Y4G8 1499 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 PLOD2O00469 737 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 SERPINB3P29508 390 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 PTPN5P54829 565 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 NUTM2GQ5VZR2 741 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 KRT78Q8N1N4 520 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 ITFG2Q969R8 447 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 AIF1LQ9BQI0 150 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 NRDE2Q9H7Z3 1164 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 KLHL1Q9NR64 748 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 GMEB2Q9UKD1 530 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 TTC7AQ9ULT0 858 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 ZC3H4Q9UPT8 1303 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 CASC3O15234 703 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 IFNA16P05015 189 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 UBTFL6P0CB48 400 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 EPB41P11171 864 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 NCK1P16333 377 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 MED21Q13503 144 aa8.2□□□□□ -1.1
LIMCH1-201ENST00000313860 RASSF6Q6ZTQ3 369 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms