RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 TTC12Q9H892 705 aaPredicted RBP20.53■□□□□ 0.88
HMGA1-201ENST00000311487 PRDM10Q9NQV6 1147 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 FAM184BQ9ULE4 1060 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 MYH15Q9Y2K3 1946 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 LOC102724159A0A0B4J2E5 919 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 VWA3AA6NCI4 1184 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 DHX15O43143 795 aaKnown RBP20.53■□□□□ 0.88
HMGA1-201ENST00000311487 PGK1P00558 417 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 OR52Z1P0C646 297 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 PWP2Q15269 919 aaKnown RBP20.53■□□□□ 0.88
HMGA1-201ENST00000311487 TRMT1LQ7Z2T5 733 aaKnown RBP20.53■□□□□ 0.88
HMGA1-201ENST00000311487 MLXIPQ9HAP2 919 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 ATP6V1DQ9Y5K8 247 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 POTEMA6NI47 508 aa20.52■□□□□ 0.88
HMGA1-201ENST00000311487 GAS7O60861 476 aa20.52■□□□□ 0.88
HMGA1-201ENST00000311487 ICAM3P32942 547 aa20.52■□□□□ 0.88
HMGA1-201ENST00000311487 BEX3Q00994 111 aa20.52■□□□□ 0.88
HMGA1-201ENST00000311487 HSDL1Q3SXM5 330 aa20.52■□□□□ 0.88
HMGA1-201ENST00000311487 DHX37Q8IY37 1157 aaKnown RBP20.52■□□□□ 0.88
HMGA1-201ENST00000311487 LINC00301Q8NCQ3 95 aa20.52■□□□□ 0.88
HMGA1-201ENST00000311487 HMX1Q9NP08 348 aaPredicted RBP20.52■□□□□ 0.88
HMGA1-201ENST00000311487 PP2D1A8MPX8 630 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 TRAK2O60296 914 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 AKR1A1P14550 325 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 KRT85P78386 507 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 ATP2C1P98194 919 aaPredicted RBP20.51■□□□□ 0.87
HMGA1-201ENST00000311487 DUSP28Q4G0W2 176 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 IQSEC1Q6DN90 963 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 NIPA1Q7RTP0 329 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 SLC5A5Q92911 643 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 NAP1L4Q99733 375 aaKnown RBP20.51■□□□□ 0.87
HMGA1-201ENST00000311487 RNF208Q9H0X6 261 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 POLR3EQ9NVU0 708 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 PCDHA12Q9UN75 941 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 RBM47A0AV96 593 aaKnown RBP20.51■□□□□ 0.87
HMGA1-201ENST00000311487 MYADML2A6NDP7 307 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 SEPT4O43236 478 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 BAG4O95429 457 aaKnown RBP20.51■□□□□ 0.87
HMGA1-201ENST00000311487 CCNE2O96020 404 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 COL13A1Q5TAT6 717 aaPredicted RBP20.51■□□□□ 0.87
HMGA1-201ENST00000311487 PPP1R13LQ8WUF5 828 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 SPATA33Q96N06 139 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 SDF4Q9BRK5 362 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 UNC45AQ9H3U1 944 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 SAMM50Q9Y512 469 aa20.51■□□□□ 0.87
HMGA1-201ENST00000311487 EML1O00423 815 aa20.5■□□□□ 0.87
HMGA1-201ENST00000311487 PSMD10O75832 226 aa20.5■□□□□ 0.87
HMGA1-201ENST00000311487 FARP2O94887 1054 aaPredicted RBP20.5■□□□□ 0.87
HMGA1-201ENST00000311487 CCL5P13501 91 aa20.5■□□□□ 0.87
HMGA1-201ENST00000311487 NASPP49321 788 aaPredicted RBP20.5■□□□□ 0.87
HMGA1-201ENST00000311487 SLC39A14Q15043 492 aa20.5■□□□□ 0.87
HMGA1-201ENST00000311487 CELF3Q5SZQ8 465 aaKnown RBP20.5■□□□□ 0.87
HMGA1-201ENST00000311487 NCAPH2Q6IBW4 605 aa20.5■□□□□ 0.87
HMGA1-201ENST00000311487 TLK2Q86UE8 772 aa20.5■□□□□ 0.87
HMGA1-201ENST00000311487 OR6J1Q8NGC5 347 aa20.5■□□□□ 0.87
HMGA1-201ENST00000311487 AFG1LQ8WV93 481 aa20.5■□□□□ 0.87
HMGA1-201ENST00000311487 CDHR1Q96JP9 859 aa20.5■□□□□ 0.87
HMGA1-201ENST00000311487 SPATA32Q96LK8 384 aa20.5■□□□□ 0.87
HMGA1-201ENST00000311487 JPH1Q9HDC5 661 aaPredicted RBP20.5■□□□□ 0.87
HMGA1-201ENST00000311487 CFAP45Q9UL16 551 aa20.5■□□□□ 0.87
HMGA1-201ENST00000311487 GNEQ9Y223 722 aaKnown RBP20.5■□□□□ 0.87
HMGA1-201ENST00000311487 SPTLC2O15270 562 aa20.49■□□□□ 0.87
HMGA1-201ENST00000311487 MAFGO15525 162 aa20.49■□□□□ 0.87
HMGA1-201ENST00000311487 TGFB3P10600 412 aa20.49■□□□□ 0.87
HMGA1-201ENST00000311487 CHMP4BP1P59074 171 aa20.49■□□□□ 0.87
HMGA1-201ENST00000311487 ARHGAP1Q07960 439 aa20.49■□□□□ 0.87
HMGA1-201ENST00000311487 LEO1Q8WVC0 666 aaPredicted RBP20.49■□□□□ 0.87
HMGA1-201ENST00000311487 DEFB118Q96PH6 123 aa20.49■□□□□ 0.87
HMGA1-201ENST00000311487 A0A087WWV3 80 aa20.49■□□□□ 0.87
HMGA1-201ENST00000311487 C6orf222P0C671 652 aaPredicted RBP20.49■□□□□ 0.87
HMGA1-201ENST00000311487 ME1P48163 572 aa20.49■□□□□ 0.87
HMGA1-201ENST00000311487 PKN2Q16513 984 aaKnown RBP20.49■□□□□ 0.87
HMGA1-201ENST00000311487 DTHD1Q6ZMT9 781 aa20.49■□□□□ 0.87
HMGA1-201ENST00000311487 TEKT3Q9BXF9 490 aa20.49■□□□□ 0.87
HMGA1-201ENST00000311487 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.49■□□□□ 0.871e-11■■■■■ 50.4
HMGA1-201ENST00000311487 SLC9A2Q9UBY0 812 aa20.49■□□□□ 0.87
HMGA1-201ENST00000311487 DDX20Q9UHI6 824 aaKnown RBP20.49■□□□□ 0.87
HMGA1-201ENST00000311487 VAV3Q9UKW4 847 aa20.49■□□□□ 0.87
HMGA1-201ENST00000311487 CEP131Q9UPN4 1083 aa20.49■□□□□ 0.87
HMGA1-201ENST00000311487 GH1P01241 217 aa20.48■□□□□ 0.87
HMGA1-201ENST00000311487 RARBP10826 455 aa20.48■□□□□ 0.87
HMGA1-201ENST00000311487 PTMSP20962 102 aa20.48■□□□□ 0.87
HMGA1-201ENST00000311487 NEDD9Q14511 834 aa20.48■□□□□ 0.87
HMGA1-201ENST00000311487 ZRSR1Q15695 479 aaKnown RBP20.48■□□□□ 0.87
HMGA1-201ENST00000311487 SLFN12Q8IYM2 578 aa20.48■□□□□ 0.87
HMGA1-201ENST00000311487 ZNF333Q96JL9 665 aa20.48■□□□□ 0.87
HMGA1-201ENST00000311487 FAM20AQ96MK3 541 aa20.48■□□□□ 0.87
HMGA1-201ENST00000311487 KCNV1Q6PIU1 500 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 USP49Q70CQ1 688 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 SENP7Q9BQF6 1050 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 CSRNP2Q9H175 543 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 XPNPEP3Q9NQH7 507 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 TBC1D22BQ9NU19 505 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 FBXO2Q9UK22 296 aaPredicted RBP20.47■□□□□ 0.87
HMGA1-201ENST00000311487 SYNRGQ9UMZ2 1314 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 NOP56O00567 594 aaKnown RBP20.47■□□□□ 0.87
HMGA1-201ENST00000311487 ACTR2P61160 394 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 SPIRE1Q08AE8 756 aa20.47■□□□□ 0.87
HMGA1-201ENST00000311487 UTP14CQ5TAP6 766 aaKnown RBP20.47■□□□□ 0.87
HMGA1-201ENST00000311487 LHX8Q68G74 356 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms