RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 GRAMD1CQ8IYS0 662 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 TMEM51Q9NW97 253 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 ZFATQ9P243 1243 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 EXOC7Q9UPT5 735 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 KRT19P08727 400 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 BTBD6Q96KE9 485 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 ANTXR1Q9H6X2 564 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 NHEJ1Q9H9Q4 299 aaPredicted RBP12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 SLC39A2Q9NP94 309 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 MCM9Q9NXL9 1143 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 RASA4BC9J798 803 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 RASA4O43374 803 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 PPP1R14BQ96C90 147 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 PRMT1Q99873 361 aaKnown RBP12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 PCF11O94913 1555 aaKnown RBP12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 TTLL12Q14166 644 aaPredicted RBP12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 SCYL2Q6P3W7 929 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 ELMSAN1Q6PJG2 1045 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 PDP2Q9P2J9 529 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 APOBEC2Q9Y235 224 aaKnown RBP12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 F8W031 263 aaPredicted RBP12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 H0Y626 953 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 RINT1Q6NUQ1 792 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 PBKQ96KB5 322 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 CNOT6LQ96LI5 555 aaKnown RBP12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 C6orf229H3BNL8 230 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 MBD4O95243 580 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 HAUS3Q68CZ6 603 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 GPBP1Q86WP2 473 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 STAG2Q8N3U4 1231 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 GALNT4Q8N4A0 578 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 FGGP02679 453 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 PDHBP11177 359 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 PYGBP11216 843 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 ARHGDIAP52565 204 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 DAB2IPQ5VWQ8 1189 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 XAGE3Q8WTP9 111 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 EXT2Q93063 718 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 SNX25Q9H3E2 840 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 NOD2Q9HC29 1040 aa12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 NSFL1CQ9UNZ2 370 aaKnown RBP12.65□□□□□ -0.38
SHROOM3-201ENST00000296043 PLIN5Q00G26 463 aa12.65□□□□□ -0.39
SHROOM3-201ENST00000296043 TMOD3Q9NYL9 352 aa12.65□□□□□ -0.39
SHROOM3-201ENST00000296043 ENO1P06733 434 aaKnown RBP12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 EDEM3Q9BZQ6 932 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 TRIM39Q9HCM9 518 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 ZNF219Q9P2Y4 722 aaPredicted RBP12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 HSPA4LO95757 839 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 ZC3H12BQ5HYM0 836 aaKnown RBP12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 SUPT20HQ8NEM7 779 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 TOM1O60784 492 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 ACTN1P12814 892 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 NSFP46459 744 aaKnown RBP12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 RDH13Q8NBN7 331 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 DDHD1Q8NEL9 900 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 ZNF692Q9BU19 519 aaPredicted RBP12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 NDUFB9Q9Y6M9 179 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 KIF23Q02241 960 aaPredicted RBP12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 CCDC117Q8IWD4 279 aaPredicted RBP12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 SAYSD1Q9NPB0 183 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 PCP4L1A6NKN8 68 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 PHF20L1A8MW92 1017 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 H7C1D1 291 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 INPP5DQ92835 1189 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 CNBD2Q96M20 576 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 L3MBTL1Q9Y468 752 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 KDRP35968 1356 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 ATP1A4Q13733 1029 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 SYNJ2BP-COX16A0A087WUM0 186 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 TNNC2P02585 160 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 YWHAHQ04917 246 aaPredicted RBP12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 TSPYL6Q8N831 410 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 COX16Q9P0S2 106 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 DDX39AO00148 427 aaKnown RBP12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 NOSTRINQ8IVI9 506 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 NMD3Q96D46 503 aaKnown RBP12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 TUBGCP2Q9BSJ2 902 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 LZTS3O60299 673 aaPredicted RBP12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 GIPC2Q8TF65 315 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 WDR24Q96S15 920 aa12.64□□□□□ -0.39
SHROOM3-201ENST00000296043 PAPOLAP51003 745 aaKnown RBP12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 CTDSPL2Q05D32 466 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 CCDC142Q17RM4 750 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 RABGAP1LQ5R372 815 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 MYOCDQ8IZQ8 938 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 ATP1A3P13637 1013 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 KDSRQ06136 332 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 FSCBQ5H9T9 825 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 PKD2L2Q9NZM6 624 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 ZMYM3Q14202 1370 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 NDUFA10O95299 355 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 TUBGCP3Q96CW5 907 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 ARPP21Q9UBL0 812 aaPredicted RBP12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 DEFA1P59665 94 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 DEFA3P59666 94 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 BTN2A1Q7KYR7 527 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 CATSPER1Q8NEC5 780 aa12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 PAPOLBQ9NRJ5 636 aaKnown RBP12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 ARMCX3Q9UH62 379 aaPredicted RBP12.63□□□□□ -0.39
SHROOM3-201ENST00000296043 GTPBP6O43824 516 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms