RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 LCORLQ8N3X6 602 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 TRIM4Q9C037 500 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 STK38LQ9Y2H1 464 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 SMAPO00193 183 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 IGF2BP3O00425 579 aaKnown RBP eCLIP17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 IFIT3O14879 490 aaKnown RBP17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 ATP2A2P16615 1042 aaKnown RBP17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 PTPREP23469 700 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 CCND1P24385 295 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 POLE2P56282 527 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 TRIM14Q14142 442 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 CCDC96Q2M329 555 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 ADGRA1Q86SQ6 560 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 SLC51AQ86UW1 340 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 C1orf131Q8NDD1 294 aaKnown RBP17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 CSRNP2Q9H175 543 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 MMADHCQ9H3L0 296 aaPredicted RBP17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 ADAM22Q9P0K1 906 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 ZNF652Q9Y2D9 606 aa17.25■□□□□ 0.35
CTDSP1-201ENST00000273062 LUC7L3O95232 432 aaKnown RBP17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 PAEPP09466 180 aa17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 MAGOHP61326 146 aaKnown RBP17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 NCALDP61601 193 aa17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 VPS72Q15906 364 aa17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 MAGOHBQ96A72 148 aaKnown RBP17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 EPSTI1Q96J88 318 aa17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 MMTAG2Q9BU76 263 aaKnown RBP17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 PCDHB6Q9Y5E3 794 aa17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 LRRD1A4D1F6 860 aa17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 FBXL16Q8N461 479 aa17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 CELF1Q92879 486 aaKnown RBP17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 RPS6KC1Q96S38 1066 aa17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 MYL10Q9BUA6 226 aa17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 DNAAF2Q9NVR5 837 aaKnown RBP17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 SALL4Q9UJQ4 1053 aa17.24■□□□□ 0.35
CTDSP1-201ENST00000273062 EP400Q96L91 3159 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 BTBD18B2RXH4 712 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 SMIM22K7EJ46 135 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 KLRK1P26718 216 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 GNAQP50148 359 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 RNASE9P60153 205 aaKnown RBP17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 KIF5AQ12840 1032 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 ZNF662Q6ZS27 426 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 CCDC170Q8IYT3 715 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 PROCA1Q8NCQ7 364 aaPredicted RBP17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 CHMP6Q96FZ7 201 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 YIPF2Q9BWQ6 316 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 TRIM33Q9UPN9 1127 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 BCORQ6W2J9 1755 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 UBOX5O94941 541 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 SHBGP04278 402 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 RARAP10276 462 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 ALDH3A1P30838 453 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 MYBPC3Q14896 1274 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 FOXB2Q5VYV0 432 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 IFNL3Q8IZI9 196 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 ANKRD13CQ8N6S4 541 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 PAGE5Q96GU1 130 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 KRT12Q99456 494 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 BLZF1Q9H2G9 400 aa17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 NKX1-2Q9UD57 310 aaPredicted RBP17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 CICQ96RK0 1608 aaPredicted RBP17.23■□□□□ 0.35
CTDSP1-201ENST00000273062 ATP6V1G1O75348 118 aa17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 GSTA1P08263 222 aa17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 HSPA9P38646 679 aaKnown RBP17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 EEF2KMTQ96G04 330 aa17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 RBM17Q96I25 401 aaKnown RBP17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 SUDS3Q9H7L9 328 aaPredicted RBP17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 PLCB1Q9NQ66 1216 aa17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 HYOU1Q9Y4L1 999 aa17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 COL1A1P02452 1464 aaPredicted RBP17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 GSG1L2A8MUP6 293 aa17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 CTNND1O60716 968 aaKnown RBP17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 RFC5P40937 340 aa17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 MEA1Q16626 185 aa17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 SLC17A8Q8NDX2 589 aa17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 LRP2BPQ9P2M1 347 aa17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 ABCF2Q9UG63 623 aa17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 RTL9Q8NET4 1388 aa17.22■□□□□ 0.35
CTDSP1-201ENST00000273062 CFAP73A6NFT4 308 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 GNPATO15228 680 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 NPTXRO95502 500 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 ECHS1P30084 290 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 KIF5BP33176 963 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 CTNNA1P35221 906 aaKnown RBP17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 CLEC4GQ6UXB4 293 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 TRPM8Q7Z2W7 1104 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 ARMC9Q7Z3E5 817 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 DDX42Q86XP3 938 aaKnown RBP eCLIP17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 IRF2BP1Q8IU81 584 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 ZNF317Q96PQ6 595 aaPredicted RBP17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 TLR10Q9BXR5 811 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 CAPN11Q9UMQ6 739 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 LAMB2P55268 1798 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 TRIM49BA6NDI0 452 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 RANBP6O60518 1105 aaKnown RBP17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 CYLC1P35663 651 aaPredicted RBP17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 FLT3P36888 993 aa17.21■□□□□ 0.35
CTDSP1-201ENST00000273062 SAFBQ15424 915 aaKnown RBP eCLIP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms