RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 FIGNQ5HY92 759 aa13.64□□□□□ -0.23
CHMP3-201ENST00000263856 GUF1Q8N442 669 aaKnown RBP13.64□□□□□ -0.23
CHMP3-201ENST00000263856 UBLCP1Q8WVY7 318 aaPredicted RBP13.64□□□□□ -0.23
CHMP3-201ENST00000263856 PLAAQ9Y263 795 aa13.64□□□□□ -0.23
CHMP3-201ENST00000263856 TLR2O60603 784 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 NR1D1P20393 614 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 FKBP3Q00688 224 aaKnown RBP13.63□□□□□ -0.23
CHMP3-201ENST00000263856 ZNF662Q6ZS27 426 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 DDX25Q9UHL0 483 aaKnown RBP13.63□□□□□ -0.23
CHMP3-201ENST00000263856 SRCAPQ6ZRS2 3230 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 POTEB3A0JP26 581 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 ZNF233A6NK53 670 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 POTECB2RU33 542 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 MEIS1O00470 390 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 STAT3P40763 770 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 CDK17Q00537 523 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 TTBK2Q6IQ55 1244 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 POTEBQ6S5H4 581 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 TPTE2Q6XPS3 522 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 LRRC55Q6ZSA7 311 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 WDR66Q8TBY9 1149 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 ZNF287Q9HBT7 754 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 DOT1LQ8TEK3 1739 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 SHOX2O60902 331 aaPredicted RBP13.63□□□□□ -0.23
CHMP3-201ENST00000263856 LRRC63Q05C16 580 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 KCTD1Q719H9 257 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 GPBP1Q86WP2 473 aa13.63□□□□□ -0.23
CHMP3-201ENST00000263856 DDX47Q9H0S4 455 aaKnown RBP13.63□□□□□ -0.23
CHMP3-201ENST00000263856 SEPT11Q9NVA2 429 aaKnown RBP13.63□□□□□ -0.23
CHMP3-201ENST00000263856 SERPING1P05155 500 aa13.62□□□□□ -0.23
CHMP3-201ENST00000263856 IFT88Q13099 833 aa13.62□□□□□ -0.23
CHMP3-201ENST00000263856 ADAM9Q13443 819 aa13.62□□□□□ -0.23
CHMP3-201ENST00000263856 ALS2CLQ60I27 953 aa13.62□□□□□ -0.23
CHMP3-201ENST00000263856 HGSNATQ68CP4 663 aa13.62□□□□□ -0.23
CHMP3-201ENST00000263856 DPP8Q6V1X1 898 aaPredicted RBP13.62□□□□□ -0.23
CHMP3-201ENST00000263856 GBP6Q6ZN66 633 aa13.62□□□□□ -0.23
CHMP3-201ENST00000263856 SPZ1Q9BXG8 430 aa13.62□□□□□ -0.23
CHMP3-201ENST00000263856 DPH5Q9H2P9 285 aa13.62□□□□□ -0.23
CHMP3-201ENST00000263856 PCDHA12Q9UN75 941 aa13.62□□□□□ -0.23
CHMP3-201ENST00000263856 SMIM23A6NLE4 172 aa13.62□□□□□ -0.23
CHMP3-201ENST00000263856 GSTO1P78417 241 aa13.62□□□□□ -0.23
CHMP3-201ENST00000263856 RPS6KA1Q15418 735 aa13.62□□□□□ -0.23
CHMP3-201ENST00000263856 STK17AQ9UEE5 414 aa13.62□□□□□ -0.23
CHMP3-201ENST00000263856 UFL1O94874 794 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 LSP1P33241 339 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 SAMD1Q6SPF0 538 aaPredicted RBP13.61□□□□□ -0.23
CHMP3-201ENST00000263856 CLEC4GQ6UXB4 293 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 LZTS2Q9BRK4 669 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 CEP72Q9P209 647 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 ATP6V0A2Q9Y487 856 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 USP17L15C9J2P7 530 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 USP17L13C9JLJ4 530 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 USP17L11C9JVI0 530 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 USP17L18D6R9N7 530 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 USP17L22D6RA61 530 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 USP17L17D6RBQ6 530 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 USP17L19D6RCP7 530 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 USP17L20D6RJB6 530 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 LDHCP07864 332 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 SLC9A1P19634 815 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 TNNC1P63316 161 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 IRX3P78415 501 aaPredicted RBP13.61□□□□□ -0.23
CHMP3-201ENST00000263856 HDLBPQ00341 1268 aaKnown RBP13.61□□□□□ -0.23
CHMP3-201ENST00000263856 USP17L24Q0WX57 530 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 FAM98CQ17RN3 349 aaKnown RBP13.61□□□□□ -0.23
CHMP3-201ENST00000263856 USP17L6PQ6QN14 398 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 NHSL1Q5SYE7 1610 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 PHLPP1O60346 1717 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 PVALEFA0A1B0GWK0 134 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 NR2F2P24468 414 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 HNRNPH3P31942 346 aaKnown RBP13.61□□□□□ -0.23
CHMP3-201ENST00000263856 SNAP25P60880 206 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 MFSD14BQ5SR56 506 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 MMS22LQ6ZRQ5 1243 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 ZNF804AQ7Z570 1209 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 NYXQ9GZU5 481 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 GOPCQ9HD26 462 aa13.61□□□□□ -0.23
CHMP3-201ENST00000263856 TMOD1P28289 359 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 CTNNA1P35221 906 aaKnown RBP13.6□□□□□ -0.23
CHMP3-201ENST00000263856 GRID2IPA4D2P6 1211 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 POTEFA5A3E0 1075 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 RIMBP2O15034 1052 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 NOL4O94818 638 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 POTEIP0CG38 1075 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 PDHBP11177 359 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 PRLRP16471 622 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 KCNH2Q12809 1159 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 POTEGQ6S5H5 508 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 POTEEQ6S8J3 1075 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 CCDC65Q8IXS2 484 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 MTMR9Q96QG7 549 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 SH3GL2Q99962 352 aa13.6□□□□□ -0.23
CHMP3-201ENST00000263856 C6orf229H3BNL8 230 aa13.59□□□□□ -0.23
CHMP3-201ENST00000263856 CLIC2O15247 247 aa13.59□□□□□ -0.23
CHMP3-201ENST00000263856 ABCB4P21439 1286 aa13.59□□□□□ -0.23
CHMP3-201ENST00000263856 HNRNPH1P31943 449 aaKnown RBP13.59□□□□□ -0.23
CHMP3-201ENST00000263856 CYP4A11Q02928 519 aa13.59□□□□□ -0.23
CHMP3-201ENST00000263856 PTK2Q05397 1052 aa13.59□□□□□ -0.23
CHMP3-201ENST00000263856 IKQ13123 557 aaPredicted RBP13.59□□□□□ -0.23
CHMP3-201ENST00000263856 PABPC4Q13310 644 aaKnown RBP eCLIP13.59□□□□□ -0.238e-8■□□□□ 10.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms