RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 RBM14Q96PK6 669 aaKnown RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 MYH2Q9UKX2 1941 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 FOXD2O60548 495 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 KRT16P08779 473 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 SCNN1DP51172 638 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 RENBPP51606 427 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 POLGP54098 1239 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 HECTD3Q5T447 861 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 HAUS3Q68CZ6 603 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 ANO5Q75V66 913 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 FAM200AQ8TCP9 573 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 ARHGAP45Q92619 1136 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 TMCC2O75069 709 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 TCEA3O75764 348 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 VCPP55072 806 aaKnown RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 MOGSQ13724 837 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 MAMSTRQ6ZN01 415 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 JAMLQ86YT9 394 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 ENAHQ8N8S7 591 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CLIC5Q9NZA1 410 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CEP72Q9P209 647 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 NOTOA8MTQ0 251 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 AXIN1O15169 862 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 WEE1P30291 646 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 COPB1P53618 953 aaKnown RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CACNB2Q08289 660 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 PPP2R5EQ16537 467 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 SPOUT1Q5T280 376 aaKnown RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 HS2ST1Q7LGA3 356 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 C3orf58Q8NDZ4 430 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 ATP6V1G3Q96LB4 118 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 DNAJC25Q9H1X3 360 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 SRP68Q9UHB9 627 aaKnown RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 FBXO10Q9UK96 956 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 MAGED2Q9UNF1 606 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 GTF3C1Q12789 2109 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 SSX5O60225 188 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 ALDH1L1O75891 902 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 IGHMBP2P38935 993 aaKnown RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 ARHGAP25P42331 645 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 MTHFRP42898 656 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CALCOCO2Q13137 446 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 SNAP47Q5SQN1 464 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 TXNDC2Q86VQ3 553 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CDKL2Q92772 493 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 OSBPL1AQ9BXW6 950 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 PARVBQ9HBI1 364 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 DOCK9Q9BZ29 2069 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CAPN14A8MX76 684 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 IFIT3O14879 490 aaKnown RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 PRKACBP22694 351 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CWF19L2Q2TBE0 894 aaKnown RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF710Q8N1W2 664 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 PDZD8Q8NEN9 1154 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 SH3TC2Q8TF17 1288 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 TMEM206Q9H813 350 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 PSTPIP2Q9H939 334 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 AGPAT3Q9NRZ7 376 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 HOMER3Q9NSC5 361 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 NDFIP2Q9NV92 336 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 BARX2Q9UMQ3 279 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 A8MXQ7 604 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 AKR1D1P51857 326 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 UBXN1Q04323 297 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 CSTF3Q12996 717 aaKnown RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 GNA13Q14344 377 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 PROSER3Q2NL68 480 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 FAM173BQ6P4H8 233 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 TTC5Q8N0Z6 440 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 LEO1Q8WVC0 666 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 DHTKD1Q96HY7 919 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-221ENST00000641996 EFR3BQ9Y2G0 817 aa3.88□□□□□ -1.79
SCN1A-221ENST00000641996 ARHGAP10A1A4S6 786 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 TULP2O00295 520 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 EPB41P11171 864 aaKnown RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 EEF1GP26641 437 aaKnown RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 PDE4BQ07343 736 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ERICH5Q6P6B1 374 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 MFN1Q8IWA4 741 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 LRRC59Q96AG4 307 aaKnown RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ARHGAP26Q9UNA1 814 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ZBED9Q6R2W3 1325 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 A0A087WUV0 522 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 OPA1O60313 960 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 TGFB3P10600 412 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 KCNV1Q6PIU1 500 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 C2orf69Q8N8R5 385 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 GOLM1Q8NBJ4 401 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 PLEKHA5Q9HAU0 1116 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 VCX3AQ9NNX9 186 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 PCDHGB3Q9Y5G1 929 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 EEF2P13639 858 aaKnown RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 RARSP54136 660 aaKnown RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 LRRC74AQ0VAA2 488 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 TMEM266Q2M3C6 531 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 KCTD16Q68DU8 428 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 CEP44Q9C0F1 390 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ARNT2Q9HBZ2 717 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 CABIN1Q9Y6J0 2220 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 EP300Q09472 2414 aaPredicted RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms