RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 INTUQ9ULD6 942 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 UHRF1BP1Q6BDS2 1440 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ARHGAP42A6NI28 874 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ZNF839A8K0R7 811 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 RHOBTB1O94844 696 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 EEF2P13639 858 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 MRPS15P82914 257 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 PKD2Q13563 968 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 PARP10Q53GL7 1025 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 MMS22LQ6ZRQ5 1243 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 KRT25Q7Z3Z0 450 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 NOP9Q86U38 636 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 FBXO41Q8TF61 875 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 MTBPQ96DY7 904 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TUBGCP2Q9BSJ2 902 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 PRKD2Q9BZL6 878 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 SESN1Q9Y6P5 492 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 FLG2Q5D862 2391 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 FANCMQ8IYD8 2048 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 NCOA1Q15788 1441 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 AP1G2O75843 785 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 VSIG1Q86XK7 387 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 IFNL2Q8IZJ0 200 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CEP70Q8NHQ1 597 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 VCPKMTQ9H867 229 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 MRPL40Q9NQ50 206 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 IARS2Q9NSE4 1012 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 BAIAP2L1Q9UHR4 511 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 LSM7Q9UK45 103 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 ANGPTL2Q9UKU9 493 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 UTP11Q9Y3A2 253 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 SLC12A7Q9Y666 1083 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 DICER1Q9UPY3 1922 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 RNF123Q5XPI4 1314 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 POTEFA5A3E0 1075 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 IDH1O75874 414 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 POTEIP0CG38 1075 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 BNC1Q01954 994 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 POTEEQ6S8J3 1075 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CTAGE3PQ8IX95 158 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 PAGE5Q96GU1 130 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 GSDMAQ96QA5 445 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 KRCC1Q9NPI7 259 aaPredicted RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 TXLNGQ9NUQ3 528 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 GALNT8Q9NY28 637 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 EPS15L1Q9UBC2 864 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 DDX41Q9UJV9 622 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 SOX13Q9UN79 622 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CLCA2Q9UQC9 943 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 GPR179Q6PRD1 2367 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CLTAP09496 248 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 SERPINB6P35237 376 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 ST13P50502 369 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 ITIH3Q06033 890 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 RASA3Q14644 834 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 PPP2R5BQ15173 497 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CHMP6Q96FZ7 201 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CNPPD1Q9BV87 410 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 DSCC1Q9BVC3 393 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 UBAP1Q9NZ09 502 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 ATP6V0A2Q9Y487 856 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 RGS5O15539 181 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 SYT1P21579 422 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 LIG3P49916 1009 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 SEPT2Q15019 361 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CES5AQ6NT32 575 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 SCIMPQ6UWF3 145 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 STKLD1Q8NE28 680 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 NR1H4Q96RI1 486 aaPredicted RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 OSBPL1AQ9BXW6 950 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 SYNDIG1Q9H7V2 258 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 DDX19AQ9NUU7 478 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 DBNLQ9UJU6 430 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 FNDC3AQ9Y2H6 1198 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 UHRF1BP1LA0JNW5 1464 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 RIMBP2O15034 1052 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 DYNC1LI2O43237 492 aaPredicted RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 ABL1P00519 1130 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 BMP4P12644 408 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 SKIP12755 728 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 JUNDP17535 347 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 KPNA1P52294 538 aaPredicted RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 HADHQ16836 314 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 ARHGAP15Q53QZ3 475 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 FNBP1LQ5T0N5 605 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 HHATQ5VTY9 493 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 TTC30AQ86WT1 665 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 PIP4K2CQ8TBX8 421 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 DHX38Q92620 1227 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 GFM2Q969S9 779 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 CCDC127Q96BQ5 260 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 RRP36Q96EU6 259 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 ABHD8Q96I13 439 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 SPACA7Q96KW9 195 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 SPZ1Q9BXG8 430 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 FAM192AQ9GZU8 254 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 MRGBPQ9NV56 204 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 SBNO1A3KN83 1393 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 ESRRBO95718 433 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 HOXC12P31275 282 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms