RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PLCG2P16885 1265 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 CCNE1P24864 410 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 TNNI2P48788 182 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 VAV2P52735 878 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 USP14P54578 494 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 NONOQ15233 471 aaKnown RBP eCLIP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 PDS5AQ29RF7 1337 aaKnown RBP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 PARP14Q460N5 1801 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 DNAJC21Q5F1R6 531 aaKnown RBP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 HEATR3Q7Z4Q2 680 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 CABP7Q86V35 215 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 DGKHQ86XP1 1220 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 SPATS2Q86XZ4 545 aaKnown RBP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 GTF3C2Q8WUA4 911 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 ST7Q9NRC1 585 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 LRRC4BQ9NT99 713 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 PGAP2Q9UHJ9 254 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 GOLGA6BA6NDN3 693 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 EIF3CLB5ME19 914 aaKnown RBP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 USP17L12C9JPN9 530 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 USP17L21D6R901 530 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 PRDM1O75626 825 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 TSPY3P0CV98 308 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 TSPY8P0CW00 308 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 TM4SF4P48230 202 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 NAPAP54920 295 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 PDE4DQ08499 809 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 TTC31Q49AM3 519 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 SBK1Q52WX2 424 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 EP400NLQ6ZTU2 488 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 SV2BQ7L1I2 683 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 ADSSL1Q8N142 457 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 CMTR1Q8N1G2 835 aaKnown RBP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 SYNE4Q8N205 404 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 DEFB123Q8N688 67 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 CEP120Q8N960 986 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 SDR42E1Q8WUS8 393 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 P2RX5Q93086 422 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 RRP36Q96EU6 259 aaKnown RBP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 EIF3CQ99613 913 aaKnown RBP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 EDEM3Q9BZQ6 932 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 CCSER1Q9C0I3 900 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 RRP15Q9Y3B9 282 aaKnown RBP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 HYOU1Q9Y4L1 999 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 COL11A2P13942 1736 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 CNTNAP5Q8WYK1 1306 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 MYH4Q9Y623 1939 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 A0A087X0B3 334 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 A0A1W2PQJ5 194 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 GOLGA6CA6NDK9 693 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 EBAG9O00559 213 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 PLEKHA8P1O95397 391 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 OR52Z1P0C646 297 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 GOLGA6DP0CG33 693 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 HIBADHP31937 336 aaKnown RBP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 VASPP50552 380 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-214ENST00000637038 PTPN5P54829 565 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 CDK17Q00537 523 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 SP3Q02447 781 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 GRIN1Q05586 938 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 RAD51AP2Q09MP3 1159 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 MTF1Q14872 753 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 VWA3BQ502W6 1294 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 CHRDL2Q6WN34 429 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 B4GALNT4Q76KP1 1039 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 OGFOD1Q8N543 542 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 WDR66Q8TBY9 1149 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 LRRC15Q8TF66 581 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 DNAJC7Q99615 494 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 TUBGCP2Q9BSJ2 902 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 TANGO6Q9C0B7 1094 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 ZNF408Q9H9D4 720 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 MCM9Q9NXL9 1143 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 GOLGA6AQ9NYA3 693 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 STK17AQ9UEE5 414 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 L1RE1Q9UN81 338 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 FAN1Q9Y2M0 1017 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 JRKLQ9Y4A0 524 aa4.41□□□□□ -1.7
SCN1A-214ENST00000637038 TTC36A6NLP5 189 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 PPFIA4O75335 1185 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 RPS6KA5O75582 802 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 RHOBTB3O94955 611 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 GNA14O95837 355 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 FGRP09769 529 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 GYS1P13807 737 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 SEPT2Q15019 361 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 GLE1Q53GS7 698 aaKnown RBP4.4□□□□□ -1.7
SCN1A-214ENST00000637038 FIGNQ5HY92 759 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 SUSD4Q5VX71 490 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 MCTP2Q6DN12 878 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 PDXDC2PQ6P474 469 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 VPS36Q86VN1 386 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 SMYD4Q8IYR2 804 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-214ENST00000637038 DAGLBQ8NCG7 672 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 NLRP3Q96P20 1036 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 NOX5Q96PH1 765 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 IFIH1Q9BYX4 1025 aaKnown RBP4.4□□□□□ -1.7
SCN1A-214ENST00000637038 RSPH14Q9UHP6 348 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 FAM184BQ9ULE4 1060 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 MTMR7Q9Y216 660 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms