RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 DNAAF5Q86Y56 855 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 IQCDQ96DY2 449 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 FAM167BQ9BTA0 163 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 ISCA1Q9BUE6 129 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 STMN4Q9H169 189 aaPredicted RBP12.08□□□□□ -0.48
CLN3-244ENST00000636147 TAF1DQ9H5J8 278 aaPredicted RBP12.08□□□□□ -0.48
CLN3-244ENST00000636147 PANK4Q9NVE7 773 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 PTPN22Q9Y2R2 807 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 SKAP2O75563 359 aaPredicted RBP12.08□□□□□ -0.48
CLN3-244ENST00000636147 PPP2R2AP63151 447 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 HAUS3Q68CZ6 603 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 ARMCX3Q9UH62 379 aaPredicted RBP12.08□□□□□ -0.48
CLN3-244ENST00000636147 ADAMTS13Q76LX8 1427 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 SPOPO43791 374 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 MMEP08473 750 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 TTMPQ5BVD1 217 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 STAG2Q8N3U4 1231 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 FMO2Q99518 471 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 TRIM9Q9C026 710 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 RAB17Q9H0T7 212 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 ASIC3Q9UHC3 531 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 SNX24Q9Y343 169 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 POTEMA6NI47 508 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 FAM107AO95990 144 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 SERPING1P05155 500 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 KLRC1P26715 233 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 ALKBH5Q6P6C2 394 aaKnown RBP12.07□□□□□ -0.48
CLN3-244ENST00000636147 GPBP1Q86WP2 473 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 CREG2Q8IUH2 290 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 DNAJC17Q9NVM6 304 aaKnown RBP12.07□□□□□ -0.48
CLN3-244ENST00000636147 NKIRAS1Q9NYS0 192 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 COL4A3BPQ9Y5P4 624 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 FRMPD2Q68DX3 1309 aaPredicted RBP12.07□□□□□ -0.48
CLN3-244ENST00000636147 FOXP2O15409 715 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 SART1O43290 800 aaKnown RBP12.07□□□□□ -0.48
CLN3-244ENST00000636147 PRPF6O94906 941 aaKnown RBP12.07□□□□□ -0.48
CLN3-244ENST00000636147 FGGP02679 453 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 HIBADHP31937 336 aaKnown RBP12.07□□□□□ -0.48
CLN3-244ENST00000636147 SESN3P58005 492 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 PFKFB3Q16875 520 aaPredicted RBP12.07□□□□□ -0.48
CLN3-244ENST00000636147 PDS5AQ29RF7 1337 aaKnown RBP12.07□□□□□ -0.48
CLN3-244ENST00000636147 WDR59Q6PJI9 974 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 USP17L2Q6R6M4 530 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 TEX2Q8IWB9 1127 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 KCNV2Q8TDN2 545 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 SPDL1Q96EA4 605 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 ARHGAP20Q9P2F6 1191 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 DAAM1Q9Y4D1 1078 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 MYO5BQ9ULV0 1848 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 LDHBP07195 334 aaKnown RBP12.07□□□□□ -0.48
CLN3-244ENST00000636147 SETDB1Q15047 1291 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 CCDC38Q502W7 563 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 AENQ8WTP8 325 aaKnown RBP12.07□□□□□ -0.48
CLN3-244ENST00000636147 CASKIN2Q8WXE0 1202 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 SEC16BQ96JE7 1060 aa12.07□□□□□ -0.48
CLN3-244ENST00000636147 CCDC169A6NNP5 214 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 XRCC5P13010 732 aaKnown RBP12.06□□□□□ -0.48
CLN3-244ENST00000636147 NR2F2P24468 414 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 LRRC14Q15048 493 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 CYB5D1Q6P9G0 228 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 GJA10Q969M2 543 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 MTMR8Q96EF0 704 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 VEGFAP15692 232 aaPredicted RBP12.06□□□□□ -0.48
CLN3-244ENST00000636147 STX2P32856 288 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 ZNF211Q13398 564 aaPredicted RBP12.06□□□□□ -0.48
CLN3-244ENST00000636147 EXOC3L4Q17RC7 722 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 CPSF2Q9P2I0 782 aaKnown RBP12.06□□□□□ -0.48
CLN3-244ENST00000636147 KIAA1024Q9UPX6 916 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 HIP1RO75146 1068 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 EPB41P11171 864 aaKnown RBP12.06□□□□□ -0.48
CLN3-244ENST00000636147 PBX1P40424 430 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 STAT1P42224 750 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 ZBTB16Q05516 673 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 MKRN4PQ13434 485 aaPredicted RBP12.06□□□□□ -0.48
CLN3-244ENST00000636147 ZRSR2Q15696 482 aaKnown RBP12.06□□□□□ -0.48
CLN3-244ENST00000636147 PDXDC2PQ6P474 469 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 GIMAP8Q8ND71 665 aaPredicted RBP12.06□□□□□ -0.48
CLN3-244ENST00000636147 DDX12PQ92771 950 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 COA7Q96BR5 231 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 PSMD1Q99460 953 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 TRIM7Q9C029 511 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 YIPF3Q9GZM5 350 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 PCDHA12Q9UN75 941 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 PLAGL2Q9UPG8 496 aa12.06□□□□□ -0.48
CLN3-244ENST00000636147 JCADQ9P266 1359 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 AGPSO00116 658 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 TAOK1Q7L7X3 1001 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 SLC44A5Q8NCS7 719 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 GDAP1Q8TB36 358 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 NAP1L3Q99457 506 aaPredicted RBP12.05□□□□□ -0.48
CLN3-244ENST00000636147 PNMA2Q9UL42 364 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 ATP6V0A2Q9Y487 856 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 OVOS2A0A0G2JMS6 1433 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 GFPT2O94808 682 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 GCNT3O95395 438 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 LDHCP07864 332 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 SEL1L2Q5TEA6 688 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 NUGGCQ68CJ6 796 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 TTI2Q6NXR4 508 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 SYCE1Q8N0S2 351 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms