RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 CD4P01730 458 aa20.78■□□□□ 0.92
CLN3-243ENST00000635973 CSF2RAP15509 400 aa20.78■□□□□ 0.92
CLN3-243ENST00000635973 PSMC6P62333 389 aa20.78■□□□□ 0.92
CLN3-243ENST00000635973 GHRHRQ02643 423 aa20.78■□□□□ 0.92
CLN3-243ENST00000635973 SLC43A3Q8NBI5 491 aa20.78■□□□□ 0.92
CLN3-243ENST00000635973 NSUN6Q8TEA1 469 aaKnown RBP20.78■□□□□ 0.92
CLN3-243ENST00000635973 ZSCAN31Q96LW9 406 aaPredicted RBP20.78■□□□□ 0.92
CLN3-243ENST00000635973 TAAR1Q96RJ0 339 aa20.78■□□□□ 0.92
CLN3-243ENST00000635973 SEMA6BQ9H3T3 888 aa20.78■□□□□ 0.92
CLN3-243ENST00000635973 HIPK3Q9H422 1215 aa20.78■□□□□ 0.92
CLN3-243ENST00000635973 SH2B1Q9NRF2 756 aaPredicted RBP20.78■□□□□ 0.92
CLN3-243ENST00000635973 DEXIO95424 95 aa20.77■□□□□ 0.92
CLN3-243ENST00000635973 TXNP10599 105 aaKnown RBP20.77■□□□□ 0.92
CLN3-243ENST00000635973 CYP2C18P33260 490 aa20.77■□□□□ 0.92
CLN3-243ENST00000635973 ADCY7P51828 1080 aa20.77■□□□□ 0.92
CLN3-243ENST00000635973 TTLL4Q14679 1199 aa20.77■□□□□ 0.92
CLN3-243ENST00000635973 PKN1Q16512 942 aa20.77■□□□□ 0.92
CLN3-243ENST00000635973 PSRC1Q6PGN9 363 aaPredicted RBP20.77■□□□□ 0.92
CLN3-243ENST00000635973 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.77■□□□□ 0.923e-6■□□□□ 10.1
CLN3-243ENST00000635973 A0A0C4DFX4 3053 aa20.76■□□□□ 0.91
CLN3-243ENST00000635973 SMCO2A6NFE2 343 aa20.76■□□□□ 0.91
CLN3-243ENST00000635973 EIF2AK2P19525 551 aaKnown RBP20.76■□□□□ 0.91
CLN3-243ENST00000635973 TYW1BQ6NUM6 668 aa20.76■□□□□ 0.91
CLN3-243ENST00000635973 USP17L6PQ6QN14 398 aa20.76■□□□□ 0.91
CLN3-243ENST00000635973 CCDC83Q8IWF9 413 aa20.76■□□□□ 0.91
CLN3-243ENST00000635973 CCDC148Q8NFR7 591 aa20.76■□□□□ 0.91
CLN3-243ENST00000635973 MTG1Q9BT17 334 aaPredicted RBP20.76■□□□□ 0.91
CLN3-243ENST00000635973 TRPV6Q9H1D0 765 aa20.76■□□□□ 0.91
CLN3-243ENST00000635973 MTIF3Q9H2K0 278 aaKnown RBP20.76■□□□□ 0.91
CLN3-243ENST00000635973 PXMP2Q9NR77 195 aa20.76■□□□□ 0.91
CLN3-243ENST00000635973 CUL9Q8IWT3 2517 aa20.76■□□□□ 0.91
CLN3-243ENST00000635973 STK36Q9NRP7 1315 aa20.76■□□□□ 0.91
CLN3-243ENST00000635973 LAMA2P24043 3122 aaKnown RBP20.75■□□□□ 0.91
CLN3-243ENST00000635973 B4GALT4O60513 344 aa20.75■□□□□ 0.91
CLN3-243ENST00000635973 KPNA6O60684 536 aa20.75■□□□□ 0.91
CLN3-243ENST00000635973 SUPT20HL2P0C7V6 817 aa20.75■□□□□ 0.91
CLN3-243ENST00000635973 ACRP10323 421 aa20.75■□□□□ 0.91
CLN3-243ENST00000635973 EDNRBP24530 442 aa20.75■□□□□ 0.91
CLN3-243ENST00000635973 UBE2SQ16763 222 aa20.75■□□□□ 0.91
CLN3-243ENST00000635973 FAM47CQ5HY64 1035 aa20.75■□□□□ 0.91
CLN3-243ENST00000635973 CDX2Q99626 313 aaPredicted RBP20.75■□□□□ 0.91
CLN3-243ENST00000635973 GLT8D2Q9H1C3 349 aa20.75■□□□□ 0.91
CLN3-243ENST00000635973 GRIN2DO15399 1336 aa20.75■□□□□ 0.91
CLN3-243ENST00000635973 KIAA1217Q5T5P2 1943 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 TMEM265A0A087WTH1 108 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 SPDYE3A6NKU9 549 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 PIK3CDO00329 1044 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 MEIS2O14770 477 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 MCM2P49736 904 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 PURAQ00577 322 aaKnown RBP20.74■□□□□ 0.91
CLN3-243ENST00000635973 STXBP2Q15833 593 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 TMEM240Q5SV17 173 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 SEPT14Q6ZU15 432 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 ZNF365Q70YC5 407 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 IWS1Q96ST2 819 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 C6orf50Q9HD87 102 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 IL23AQ9NPF7 189 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 RIC8AQ9NPQ8 531 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 VPS54Q9P1Q0 977 aa20.74■□□□□ 0.91
CLN3-243ENST00000635973 ORC3Q9UBD5 711 aaPredicted RBP20.74■□□□□ 0.91
CLN3-243ENST00000635973 DTNBO60941 627 aa20.73■□□□□ 0.91
CLN3-243ENST00000635973 CTDNEP1O95476 244 aa20.73■□□□□ 0.91
CLN3-243ENST00000635973 CCL23P55773 120 aa20.73■□□□□ 0.91
CLN3-243ENST00000635973 CHMP4BP1P59074 171 aa20.73■□□□□ 0.91
CLN3-243ENST00000635973 RPUSD2Q8IZ73 545 aaKnown RBP20.73■□□□□ 0.91
CLN3-243ENST00000635973 NSUN7Q8NE18 718 aaKnown RBP20.73■□□□□ 0.91
CLN3-243ENST00000635973 WASF1Q92558 559 aa20.73■□□□□ 0.91
CLN3-243ENST00000635973 EHMT1Q9H9B1 1298 aa20.73■□□□□ 0.91
CLN3-243ENST00000635973 ESYT2A0FGR8 921 aa20.72■□□□□ 0.91
CLN3-243ENST00000635973 FGBP02675 491 aa20.72■□□□□ 0.91
CLN3-243ENST00000635973 MYCLP12524 364 aaPredicted RBP20.72■□□□□ 0.91
CLN3-243ENST00000635973 XBP1P17861 261 aa20.72■□□□□ 0.91
CLN3-243ENST00000635973 DNAJB2P25686 324 aa20.72■□□□□ 0.91
CLN3-243ENST00000635973 GNA11P29992 359 aa20.72■□□□□ 0.91
CLN3-243ENST00000635973 NLRP5P59047 1200 aa20.72■□□□□ 0.91
CLN3-243ENST00000635973 C16orf59Q7L2K0 433 aa20.72■□□□□ 0.91
CLN3-243ENST00000635973 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.72■□□□□ 0.91
CLN3-243ENST00000635973 COPS5Q92905 334 aa20.72■□□□□ 0.91
CLN3-243ENST00000635973 AIFM3Q96NN9 605 aa20.72■□□□□ 0.91
CLN3-243ENST00000635973 PDCD2LQ9BRP1 358 aa20.72■□□□□ 0.91
CLN3-243ENST00000635973 NOC4LQ9BVI4 516 aaKnown RBP20.72■□□□□ 0.91
CLN3-243ENST00000635973 TTYH1Q9H313 450 aaPredicted RBP20.72■□□□□ 0.91
CLN3-243ENST00000635973 SH3GLB2Q9NR46 395 aa20.72■□□□□ 0.91
CLN3-243ENST00000635973 UNC80Q8N2C7 3258 aa20.71■□□□□ 0.91
CLN3-243ENST00000635973 A6NJR5 290 aa20.71■□□□□ 0.91
CLN3-243ENST00000635973 JAK2O60674 1132 aa20.71■□□□□ 0.91
CLN3-243ENST00000635973 CD2BP2O95400 341 aaKnown RBP20.71■□□□□ 0.91
CLN3-243ENST00000635973 NR3C2P08235 984 aa20.71■□□□□ 0.91
CLN3-243ENST00000635973 CCND2P30279 289 aa20.71■□□□□ 0.91
CLN3-243ENST00000635973 ST3GAL1Q11201 340 aa20.71■□□□□ 0.91
CLN3-243ENST00000635973 PGM5Q15124 567 aa20.71■□□□□ 0.91
CLN3-243ENST00000635973 TEX2Q8IWB9 1127 aa20.71■□□□□ 0.91
CLN3-243ENST00000635973 BICD2Q8TD16 824 aa20.71■□□□□ 0.91
CLN3-243ENST00000635973 MYLIPQ8WY64 445 aa20.71■□□□□ 0.91
CLN3-243ENST00000635973 TIFAQ96CG3 184 aa20.71■□□□□ 0.91
CLN3-243ENST00000635973 LLPHQ9BRT6 129 aaKnown RBP20.71■□□□□ 0.91
CLN3-243ENST00000635973 ALG1Q9BT22 464 aa20.71■□□□□ 0.91
CLN3-243ENST00000635973 ZMYND12Q9H0C1 365 aa20.71■□□□□ 0.91
CLN3-243ENST00000635973 TRMT13Q9NUP7 481 aaKnown RBP20.71■□□□□ 0.91
CLN3-243ENST00000635973 NOD1Q9Y239 953 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms