RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 RPS6P62753 249 aaKnown RBP17.47■□□□□ 0.39
CPSF1-213ENST00000620219 MTMR1Q13613 665 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 ZNF397Q8NF99 534 aaPredicted RBP17.47■□□□□ 0.39
CPSF1-213ENST00000620219 POTEB2H3BUK9 544 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 PRPHP41219 470 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 XKR9Q5GH70 373 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 DYDC2Q96IM9 177 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 CCSER1Q9C0I3 900 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 STK17AQ9UEE5 414 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 SNHG28P0DPA3 235 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 HS2ST1Q7LGA3 356 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 CUEDC2Q9H467 287 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 ERCC5P28715 1186 aaPredicted RBP17.47■□□□□ 0.39
CPSF1-213ENST00000620219 PDE4CQ08493 712 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 STXBP4Q6ZWJ1 553 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 CCDC112Q8NEF3 446 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 NUDT12Q9BQG2 462 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.47■□□□□ 0.392e-6■■■■□ 20
CPSF1-213ENST00000620219 V9GYY5 206 aaPredicted RBP17.47■□□□□ 0.39
CPSF1-213ENST00000620219 MYH6P13533 1939 aa17.47■□□□□ 0.39
CPSF1-213ENST00000620219 CD44P16070 742 aaKnown RBP17.46■□□□□ 0.39
CPSF1-213ENST00000620219 UTP14CQ5TAP6 766 aaKnown RBP17.46■□□□□ 0.39
CPSF1-213ENST00000620219 SIAH1Q8IUQ4 282 aa17.46■□□□□ 0.39
CPSF1-213ENST00000620219 ENOX1Q8TC92 643 aaKnown RBP17.46■□□□□ 0.39
CPSF1-213ENST00000620219 CNKSR2Q8WXI2 1034 aa17.46■□□□□ 0.39
CPSF1-213ENST00000620219 PCDHB13Q9Y5F0 798 aa17.46■□□□□ 0.39
CPSF1-213ENST00000620219 DPYDQ12882 1025 aa17.46■□□□□ 0.39
CPSF1-213ENST00000620219 GNPTABQ3T906 1256 aa17.46■□□□□ 0.39
CPSF1-213ENST00000620219 KIAA1755Q5JYT7 1200 aa17.46■□□□□ 0.39
CPSF1-213ENST00000620219 TAAR1Q96RJ0 339 aa17.46■□□□□ 0.39
CPSF1-213ENST00000620219 MPHOSPH6Q99547 160 aaKnown RBP17.46■□□□□ 0.39
CPSF1-213ENST00000620219 NOP56O00567 594 aaKnown RBP17.46■□□□□ 0.39
CPSF1-213ENST00000620219 SARM1Q6SZW1 724 aa17.46■□□□□ 0.39
CPSF1-213ENST00000620219 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.46■□□□□ 0.394e-7■■■■■ 75.7
CPSF1-213ENST00000620219 ARAP2Q8WZ64 1704 aa17.46■□□□□ 0.38
CPSF1-213ENST00000620219 RREB1Q92766 1687 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 NCAPHQ15003 741 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 KIAA1328Q86T90 577 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 CRACR2AQ9BSW2 395 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 TRIM9Q9C026 710 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 KCTD2Q14681 263 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 RAD54LQ92698 747 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 PURBQ96QR8 312 aaKnown RBP17.45■□□□□ 0.38
CPSF1-213ENST00000620219 IQCA1LA6NCM1 817 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 TEX33O43247 280 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 PTPRAP18433 802 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 DESI2Q9BSY9 194 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 WDR11Q9BZH6 1224 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 FAM207AQ9NSI2 230 aaPredicted RBP17.45■□□□□ 0.38
CPSF1-213ENST00000620219 USP27XA6NNY8 438 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 HARSP12081 509 aaKnown RBP17.45■□□□□ 0.38
CPSF1-213ENST00000620219 FAM102BQ5T8I3 360 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 SPECC1LQ69YQ0 1117 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 GLG1Q92896 1179 aa17.45■□□□□ 0.38
CPSF1-213ENST00000620219 DOCK2Q92608 1830 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 NID2Q14112 1375 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 FZD9O00144 591 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 PEX10O60683 326 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 USP8P40818 1118 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 MLXIPQ9HAP2 919 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.44■□□□□ 0.381e-7■■□□□ 13.8
CPSF1-213ENST00000620219 MYMKA6NI61 221 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 FAM86B1E9PN63 330 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 FAM86B2P0C5J1 330 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 STK4Q13043 487 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 ODR4Q5SWX8 454 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 PPP4R3AQ6IN85 833 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 RGS22Q8NE09 1264 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 P2RX5Q93086 422 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 FAM20AQ96MK3 541 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 EIF2AK1Q9BQI3 630 aaKnown RBP17.44■□□□□ 0.38
CPSF1-213ENST00000620219 AKR1B15C9JRZ8 316 aaPredicted RBP17.44■□□□□ 0.38
CPSF1-213ENST00000620219 MEIS2O14770 477 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 MSH4O15457 936 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 ICAM1P05362 532 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 FAM178BQ8IXR5 827 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 BAG1Q99933 345 aaPredicted RBP17.44■□□□□ 0.38
CPSF1-213ENST00000620219 TCHPQ9BT92 498 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.44■□□□□ 0.38
CPSF1-213ENST00000620219 TEX13BQ9BXU2 312 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 KIAA1683Q9H0B3 1180 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 PPP1R9AQ9ULJ8 1098 aa17.44■□□□□ 0.38
CPSF1-213ENST00000620219 CETN3O15182 167 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 KRT9P35527 623 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 LUC7L2Q9Y383 392 aaKnown RBP17.43■□□□□ 0.38
CPSF1-213ENST00000620219 PTGER2P43116 358 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 CYP2J2P51589 502 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 MNS1Q8NEH6 495 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 B4DLN1 442 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 C19orf81C9J6K1 198 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 CLIC2O15247 247 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 PRPF6O94906 941 aaKnown RBP17.43■□□□□ 0.38
CPSF1-213ENST00000620219 ARP10275 920 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 VGLL4Q14135 290 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 MAGEF1Q9HAY2 307 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 LZTFL1Q9NQ48 299 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 GRIN3BO60391 1043 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 PDIA5Q14554 519 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 GINS2Q9Y248 185 aa17.43■□□□□ 0.38
CPSF1-213ENST00000620219 CNTNAP1P78357 1384 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms