RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 KATNAL1Q9BW62 490 aa22.14■■□□□ 1.13
UPF1-212ENST00000601689 ZMYND12Q9H0C1 365 aa22.14■■□□□ 1.13
UPF1-212ENST00000601689 NOP56O00567 594 aaKnown RBP22.13■■□□□ 1.13
UPF1-212ENST00000601689 PFKFB2O60825 505 aa22.13■■□□□ 1.13
UPF1-212ENST00000601689 GGPS1O95749 300 aa22.13■■□□□ 1.13
UPF1-212ENST00000601689 MRPS9P82933 396 aaKnown RBP22.13■■□□□ 1.13
UPF1-212ENST00000601689 TMEM63BQ5T3F8 832 aa22.13■■□□□ 1.13
UPF1-212ENST00000601689 REXO1Q8N1G1 1221 aaKnown RBP22.13■■□□□ 1.13
UPF1-212ENST00000601689 PPTC7Q8NI37 304 aa22.13■■□□□ 1.13
UPF1-212ENST00000601689 AFG1LQ8WV93 481 aa22.13■■□□□ 1.13
UPF1-212ENST00000601689 GPRASP2Q96D09 838 aa22.13■■□□□ 1.13
UPF1-212ENST00000601689 TMEM39AQ9NV64 488 aa22.13■■□□□ 1.13
UPF1-212ENST00000601689 TPCN1Q9ULQ1 816 aa22.13■■□□□ 1.13
UPF1-212ENST00000601689 DNAH12Q6ZR08 3092 aa22.12■■□□□ 1.13
UPF1-212ENST00000601689 PURAQ00577 322 aaKnown RBP22.12■■□□□ 1.13
UPF1-212ENST00000601689 ARHGAP1Q07960 439 aa22.12■■□□□ 1.13
UPF1-212ENST00000601689 SCRN1Q12765 414 aa22.12■■□□□ 1.13
UPF1-212ENST00000601689 PKN1Q16512 942 aa22.12■■□□□ 1.13
UPF1-212ENST00000601689 CELF3Q5SZQ8 465 aaKnown RBP22.12■■□□□ 1.13
UPF1-212ENST00000601689 TYW1BQ6NUM6 668 aa22.12■■□□□ 1.13
UPF1-212ENST00000601689 SPATA33Q96N06 139 aa22.12■■□□□ 1.13
UPF1-212ENST00000601689 SENP7Q9BQF6 1050 aa22.12■■□□□ 1.13
UPF1-212ENST00000601689 ANO3Q9BYT9 981 aa22.12■■□□□ 1.13
UPF1-212ENST00000601689 SPATA31C2B4DYI2 1134 aa22.11■■□□□ 1.13
UPF1-212ENST00000601689 MMP3P08254 477 aa22.11■■□□□ 1.13
UPF1-212ENST00000601689 SUPT20HL2P0C7V6 817 aa22.11■■□□□ 1.13
UPF1-212ENST00000601689 MTMR1Q13613 665 aa22.11■■□□□ 1.13
UPF1-212ENST00000601689 GALNT17Q6IS24 598 aa22.11■■□□□ 1.13
UPF1-212ENST00000601689 CHRDL2Q6WN34 429 aa22.11■■□□□ 1.13
UPF1-212ENST00000601689 ZFP91Q96JP5 570 aaPredicted RBP22.11■■□□□ 1.13
UPF1-212ENST00000601689 CEP290O15078 2479 aa22.11■■□□□ 1.13
UPF1-212ENST00000601689 PPFIA3O75145 1194 aa22.1■■□□□ 1.13
UPF1-212ENST00000601689 PPFIA4O75335 1185 aa22.1■■□□□ 1.13
UPF1-212ENST00000601689 RGS20O76081 388 aa22.1■■□□□ 1.13
UPF1-212ENST00000601689 RAG1P15918 1043 aa22.1■■□□□ 1.13
UPF1-212ENST00000601689 UBA1P22314 1058 aaKnown RBP22.1■■□□□ 1.13
UPF1-212ENST00000601689 PTGS1P23219 599 aa22.1■■□□□ 1.13
UPF1-212ENST00000601689 CDK7P50613 346 aa22.1■■□□□ 1.13
UPF1-212ENST00000601689 FAM47CQ5HY64 1035 aa22.1■■□□□ 1.13
UPF1-212ENST00000601689 MYSM1Q5VVJ2 828 aa22.1■■□□□ 1.13
UPF1-212ENST00000601689 JAKMIP3Q5VZ66 844 aa22.1■■□□□ 1.13
UPF1-212ENST00000601689 VPS54Q9P1Q0 977 aa22.1■■□□□ 1.13
UPF1-212ENST00000601689 GTF3C3Q9Y5Q9 886 aa22.1■■□□□ 1.13
UPF1-212ENST00000601689 ST18O60284 1047 aa22.09■■□□□ 1.13
UPF1-212ENST00000601689 RBM25P49756 843 aaKnown RBP22.09■■□□□ 1.13
UPF1-212ENST00000601689 CLK2P49760 499 aaKnown RBP22.09■■□□□ 1.13
UPF1-212ENST00000601689 CHMP4BP1P59074 171 aa22.09■■□□□ 1.13
UPF1-212ENST00000601689 PTPN11Q06124 597 aaPredicted RBP22.09■■□□□ 1.13
UPF1-212ENST00000601689 NFRKBQ6P4R8 1299 aa22.09■■□□□ 1.13
UPF1-212ENST00000601689 METTL7BQ6UX53 244 aa22.09■■□□□ 1.13
UPF1-212ENST00000601689 ZSCAN31Q96LW9 406 aaPredicted RBP22.09■■□□□ 1.13
UPF1-212ENST00000601689 JADE2Q9NQC1 790 aa22.09■■□□□ 1.13
UPF1-212ENST00000601689 LIMCH1Q9UPQ0 1083 aa22.09■■□□□ 1.13
UPF1-212ENST00000601689 STK36Q9NRP7 1315 aa22.08■■□□□ 1.13
UPF1-212ENST00000601689 SREBF1P36956 1147 aa22.08■■□□□ 1.13
UPF1-212ENST00000601689 MXRA8Q9BRK3 442 aa22.08■■□□□ 1.13
UPF1-212ENST00000601689 UBE2OQ9C0C9 1292 aaKnown RBP22.08■■□□□ 1.13
UPF1-212ENST00000601689 PDLIM7Q9NR12 457 aa22.08■■□□□ 1.13
UPF1-212ENST00000601689 NOD1Q9Y239 953 aa22.08■■□□□ 1.13
UPF1-212ENST00000601689 UBIAD1Q9Y5Z9 338 aa22.08■■□□□ 1.13
UPF1-212ENST00000601689 A0A1W2PPC1 479 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 BMP8BP34820 402 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 PSMC6P62333 389 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 ARHGAP4P98171 946 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 FAAP100Q0VG06 881 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 RABEP1Q15276 862 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 ME3Q16798 604 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 CEP55Q53EZ4 464 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 CYFIP1Q7L576 1253 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 FAM126BQ8IXS8 530 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 SLC43A3Q8NBI5 491 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 GTF3C6Q969F1 213 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 SDF4Q9BRK5 362 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 TMEM260Q9NX78 707 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 ORC3Q9UBD5 711 aaPredicted RBP22.07■■□□□ 1.12
UPF1-212ENST00000601689 TCEAL9Q9UHQ7 104 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 PCDHA4Q9UN74 947 aa22.07■■□□□ 1.12
UPF1-212ENST00000601689 COLQQ9Y215 455 aaPredicted RBP22.07■■□□□ 1.12
UPF1-212ENST00000601689 KIAA0355O15063 1070 aa22.06■■□□□ 1.12
UPF1-212ENST00000601689 MAGEA10P43363 369 aaPredicted RBP22.06■■□□□ 1.12
UPF1-212ENST00000601689 MDM2Q00987 491 aaPredicted RBP22.06■■□□□ 1.12
UPF1-212ENST00000601689 SP2Q02086 613 aa22.06■■□□□ 1.12
UPF1-212ENST00000601689 PGBD1Q96JS3 809 aa22.06■■□□□ 1.12
UPF1-212ENST00000601689 BRMS1Q9HCU9 246 aa22.06■■□□□ 1.12
UPF1-212ENST00000601689 SCN10AQ9Y5Y9 1956 aa22.05■■□□□ 1.12
UPF1-212ENST00000601689 SORBS3O60504 671 aa22.05■■□□□ 1.12
UPF1-212ENST00000601689 ITGB5P18084 799 aa22.05■■□□□ 1.12
UPF1-212ENST00000601689 SETQ01105 290 aaPredicted RBP22.05■■□□□ 1.12
UPF1-212ENST00000601689 TRIM29Q14134 588 aa22.05■■□□□ 1.12
UPF1-212ENST00000601689 NBPF20Q3BBV1 942 aa22.05■■□□□ 1.12
UPF1-212ENST00000601689 HSDL1Q3SXM5 330 aa22.05■■□□□ 1.12
UPF1-212ENST00000601689 NIPA1Q7RTP0 329 aa22.05■■□□□ 1.12
UPF1-212ENST00000601689 C7orf31Q8N865 590 aa22.05■■□□□ 1.12
UPF1-212ENST00000601689 GDF15Q99988 308 aa22.05■■□□□ 1.12
UPF1-212ENST00000601689 SH2B1Q9NRF2 756 aaPredicted RBP22.05■■□□□ 1.12
UPF1-212ENST00000601689 ZNF215Q9UL58 517 aaPredicted RBP22.05■■□□□ 1.12
UPF1-212ENST00000601689 BLIDQ8IZY5 108 aa22.04■■□□□ 1.12
UPF1-212ENST00000601689 NECAB1Q8N987 351 aa22.04■■□□□ 1.12
UPF1-212ENST00000601689 TIMP1P01033 207 aa22.03■■□□□ 1.12
UPF1-212ENST00000601689 CYP3A4P08684 503 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms