RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TPCN1Q9ULQ1 816 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 PCDHA6Q9UN73 950 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 PCDHA8Q9Y5H6 950 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 TRIP12Q14669 1992 aaPredicted RBP18.5■□□□□ 0.55
TRIM28-213ENST00000598355 SMCO2A6NFE2 343 aa18.5■□□□□ 0.55
TRIM28-213ENST00000598355 PFKFB2O60825 505 aa18.5■□□□□ 0.55
TRIM28-213ENST00000598355 FOSP01100 380 aaPredicted RBP18.5■□□□□ 0.55
TRIM28-213ENST00000598355 SCRN1Q12765 414 aa18.5■□□□□ 0.55
TRIM28-213ENST00000598355 LAMC2Q13753 1193 aa18.5■□□□□ 0.55
TRIM28-213ENST00000598355 ANKRD1Q15327 319 aa18.5■□□□□ 0.55
TRIM28-213ENST00000598355 GPRASP2Q96D09 838 aa18.5■□□□□ 0.55
TRIM28-213ENST00000598355 ZFP91Q96JP5 570 aaPredicted RBP18.5■□□□□ 0.55
TRIM28-213ENST00000598355 LARP6Q9BRS8 491 aaKnown RBP18.5■□□□□ 0.55
TRIM28-213ENST00000598355 PCDH10Q9P2E7 1040 aa18.5■□□□□ 0.55
TRIM28-213ENST00000598355 UBIAD1Q9Y5Z9 338 aa18.5■□□□□ 0.55
TRIM28-213ENST00000598355 WDR81Q562E7 1941 aa18.5■□□□□ 0.55
TRIM28-213ENST00000598355 DCDC2CA8MYV0 355 aa18.49■□□□□ 0.55
TRIM28-213ENST00000598355 GGPS1O95749 300 aa18.49■□□□□ 0.55
TRIM28-213ENST00000598355 ITGB5P18084 799 aa18.49■□□□□ 0.55
TRIM28-213ENST00000598355 ITGB8P26012 769 aa18.49■□□□□ 0.55
TRIM28-213ENST00000598355 SREBF1P36956 1147 aa18.49■□□□□ 0.55
TRIM28-213ENST00000598355 PSMC6P62333 389 aa18.49■□□□□ 0.55
TRIM28-213ENST00000598355 FAM177A1Q8N128 213 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-213ENST00000598355 CCDC12Q8WUD4 166 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-213ENST00000598355 KIF2CQ99661 725 aa18.49■□□□□ 0.55
TRIM28-213ENST00000598355 SENP7Q9BQF6 1050 aa18.49■□□□□ 0.55
TRIM28-213ENST00000598355 SLC26A6Q9BXS9 759 aa18.49■□□□□ 0.55
TRIM28-213ENST00000598355 ANO3Q9BYT9 981 aa18.49■□□□□ 0.55
TRIM28-213ENST00000598355 SH3GLB2Q9NR46 395 aa18.49■□□□□ 0.55
TRIM28-213ENST00000598355 STK36Q9NRP7 1315 aa18.49■□□□□ 0.55
TRIM28-213ENST00000598355 ADAMTS3O15072 1205 aa18.48■□□□□ 0.55
TRIM28-213ENST00000598355 F2P00734 622 aa18.48■□□□□ 0.55
TRIM28-213ENST00000598355 MYL3P08590 195 aa18.48■□□□□ 0.55
TRIM28-213ENST00000598355 HSDL1Q3SXM5 330 aa18.48■□□□□ 0.55
TRIM28-213ENST00000598355 NFRKBQ6P4R8 1299 aa18.48■□□□□ 0.55
TRIM28-213ENST00000598355 DHX37Q8IY37 1157 aaKnown RBP18.48■□□□□ 0.55
TRIM28-213ENST00000598355 CCDC148Q8NFR7 591 aa18.48■□□□□ 0.55
TRIM28-213ENST00000598355 KAT2BQ92831 832 aa18.48■□□□□ 0.55
TRIM28-213ENST00000598355 EHMT1Q9H9B1 1298 aa18.48■□□□□ 0.55
TRIM28-213ENST00000598355 PRKAG2Q9UGJ0 569 aa18.48■□□□□ 0.55
TRIM28-213ENST00000598355 HAS3O00219 553 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 B4GALT4O60513 344 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 DEXIO95424 95 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 KCNA2P16389 499 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 RBM25P49756 843 aaKnown RBP18.47■□□□□ 0.55
TRIM28-213ENST00000598355 AKAP17AQ02040 695 aaKnown RBP18.47■□□□□ 0.55
TRIM28-213ENST00000598355 STK3Q13188 491 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 DGKDQ16760 1214 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 MCTP2Q6DN12 878 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 METTL7BQ6UX53 244 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 SESTD1Q86VW0 696 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 TRIM22Q8IYM9 498 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 VTI1AQ96AJ9 217 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 CDHR1Q96JP9 859 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 PRDM5Q9NQX1 630 aaPredicted RBP18.47■□□□□ 0.55
TRIM28-213ENST00000598355 TMEM260Q9NX78 707 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 RTEL1Q9NZ71 1219 aa18.47■□□□□ 0.55
TRIM28-213ENST00000598355 LAMA2P24043 3122 aaKnown RBP18.46■□□□□ 0.55
TRIM28-213ENST00000598355 CPLX1O14810 134 aa18.46■□□□□ 0.55
TRIM28-213ENST00000598355 TLR3O15455 904 aaKnown RBP18.46■□□□□ 0.55
TRIM28-213ENST00000598355 PPFIA3O75145 1194 aa18.46■□□□□ 0.55
TRIM28-213ENST00000598355 LARGE1O95461 756 aa18.46■□□□□ 0.55
TRIM28-213ENST00000598355 GNA11P29992 359 aa18.46■□□□□ 0.55
TRIM28-213ENST00000598355 MDM2Q00987 491 aaPredicted RBP18.46■□□□□ 0.55
TRIM28-213ENST00000598355 PTPN11Q06124 597 aaPredicted RBP18.46■□□□□ 0.55
TRIM28-213ENST00000598355 SSRP1Q08945 709 aaKnown RBP18.46■□□□□ 0.55
TRIM28-213ENST00000598355 NEDD9Q14511 834 aa18.46■□□□□ 0.55
TRIM28-213ENST00000598355 NPY5RQ15761 445 aa18.46■□□□□ 0.55
TRIM28-213ENST00000598355 CPLX2Q6PUV4 134 aaKnown RBP18.46■□□□□ 0.55
TRIM28-213ENST00000598355 NLRX1Q86UT6 975 aa18.46■□□□□ 0.55
TRIM28-213ENST00000598355 REXO1Q8N1G1 1221 aaKnown RBP18.46■□□□□ 0.55
TRIM28-213ENST00000598355 PGBD1Q96JS3 809 aa18.46■□□□□ 0.55
TRIM28-213ENST00000598355 SLKQ9H2G2 1235 aaPredicted RBP18.46■□□□□ 0.55
TRIM28-213ENST00000598355 BCAS3Q9H6U6 928 aa18.46■□□□□ 0.55
TRIM28-213ENST00000598355 C6orf50Q9HD87 102 aa18.46■□□□□ 0.55
TRIM28-213ENST00000598355 JADE2Q9NQC1 790 aa18.46■□□□□ 0.55
TRIM28-213ENST00000598355 TMEM39AQ9NV64 488 aa18.46■□□□□ 0.55
TRIM28-213ENST00000598355 VPS54Q9P1Q0 977 aa18.46■□□□□ 0.55
TRIM28-213ENST00000598355 KAT6AQ92794 2004 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 MAFGO15525 162 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 PPFIA4O75335 1185 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 CDKL5O76039 1030 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 CTDNEP1O95476 244 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 NEK4P51957 841 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 ARHGAP4P98171 946 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 ME3Q16798 604 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 NBPF20Q3BBV1 942 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 DAGLBQ8NCG7 672 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 GTF3C6Q969F1 213 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 SPATA33Q96N06 139 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 MXRA8Q9BRK3 442 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 SCN5AQ14524 2016 aa18.45■□□□□ 0.54
TRIM28-213ENST00000598355 M0R2N6 131 aa18.44■□□□□ 0.54
TRIM28-213ENST00000598355 TIMP1P01033 207 aa18.44■□□□□ 0.54
TRIM28-213ENST00000598355 CYP3A4P08684 503 aa18.44■□□□□ 0.54
TRIM28-213ENST00000598355 MTMR1Q13613 665 aa18.44■□□□□ 0.54
TRIM28-213ENST00000598355 NIPA1Q7RTP0 329 aa18.44■□□□□ 0.54
TRIM28-213ENST00000598355 GIMAP8Q8ND71 665 aaPredicted RBP18.44■□□□□ 0.54
TRIM28-213ENST00000598355 BICD2Q8TD16 824 aa18.44■□□□□ 0.54
TRIM28-213ENST00000598355 BADQ92934 168 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms