RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 LAMC2Q13753 1193 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 ME3Q16798 604 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 CELF3Q5SZQ8 465 aaKnown RBP15.86■□□□□ 0.13
UPF1-205ENST00000598209 ANKRD33Q7Z3H0 272 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 NLRX1Q86UT6 975 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 CCDC148Q8NFR7 591 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 EMID1Q96A84 441 aaPredicted RBP15.86■□□□□ 0.13
UPF1-205ENST00000598209 KIF2CQ99661 725 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 MTG1Q9BT17 334 aaPredicted RBP15.86■□□□□ 0.13
UPF1-205ENST00000598209 PRDM5Q9NQX1 630 aaPredicted RBP15.86■□□□□ 0.13
UPF1-205ENST00000598209 PDLIM7Q9NR12 457 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 VPS54Q9P1Q0 977 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 PCDH10Q9P2E7 1040 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 PRKAG2Q9UGJ0 569 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 MROH7Q68CQ1 1323 aa15.86■□□□□ 0.13
UPF1-205ENST00000598209 DCDC2CA8MYV0 355 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 SPATA31C2B4DYI2 1134 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 ADAMTS3O15072 1205 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 SORBS3O60504 671 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 LARGE1O95461 756 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 CLTBP09497 229 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 GNA11P29992 359 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 RBM25P49756 843 aaKnown RBP15.85■□□□□ 0.13
UPF1-205ENST00000598209 MYSM1Q5VVJ2 828 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 JAKMIP3Q5VZ66 844 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 CHRDL2Q6WN34 429 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 NECAB1Q8N987 351 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 SLC43A3Q8NBI5 491 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 PPTC7Q8NI37 304 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 GPRASP2Q96D09 838 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 TOX2Q96NM4 488 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 SH3GLB2Q9NR46 395 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 UBIAD1Q9Y5Z9 338 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 GRIN2DO15399 1336 aa15.85■□□□□ 0.13
UPF1-205ENST00000598209 ITGB5P18084 799 aa15.84■□□□□ 0.13
UPF1-205ENST00000598209 DGKDQ16760 1214 aa15.84■□□□□ 0.13
UPF1-205ENST00000598209 SH3RF1Q7Z6J0 888 aa15.84■□□□□ 0.13
UPF1-205ENST00000598209 REXO1Q8N1G1 1221 aaKnown RBP15.84■□□□□ 0.13
UPF1-205ENST00000598209 BICD2Q8TD16 824 aa15.84■□□□□ 0.13
UPF1-205ENST00000598209 GTF3C6Q969F1 213 aa15.84■□□□□ 0.13
UPF1-205ENST00000598209 SPATA33Q96N06 139 aa15.84■□□□□ 0.13
UPF1-205ENST00000598209 SEZ6LQ9BYH1 1024 aa15.84■□□□□ 0.13
UPF1-205ENST00000598209 MLXIPQ9HAP2 919 aa15.84■□□□□ 0.13
UPF1-205ENST00000598209 UPF2Q9HAU5 1272 aaKnown RBP15.84■□□□□ 0.13
UPF1-205ENST00000598209 COLQQ9Y215 455 aaPredicted RBP15.84■□□□□ 0.13
UPF1-205ENST00000598209 STK36Q9NRP7 1315 aa15.84■□□□□ 0.13
UPF1-205ENST00000598209 TRIM43BA6NCK2 446 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 DTNBO60941 627 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 CTDNEP1O95476 244 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 SREBF1P36956 1147 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 MAGEA10P43363 369 aaPredicted RBP15.83■□□□□ 0.12
UPF1-205ENST00000598209 NLRP5P59047 1200 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 FAAP100Q0VG06 881 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 NEDD9Q14511 834 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 MCTP2Q6DN12 878 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 FAM126BQ8IXS8 530 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 RASGRP4Q8TDF6 673 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 TRIM43Q96BQ3 446 aaPredicted RBP15.83■□□□□ 0.12
UPF1-205ENST00000598209 CDHR1Q96JP9 859 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 AIFM3Q96NN9 605 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 GDF15Q99988 308 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 MXRA8Q9BRK3 442 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 BCAS3Q9H6U6 928 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 JADE2Q9NQC1 790 aa15.83■□□□□ 0.12
UPF1-205ENST00000598209 KIAA0355O15063 1070 aa15.82■□□□□ 0.12
UPF1-205ENST00000598209 TLR3O15455 904 aaKnown RBP15.82■□□□□ 0.12
UPF1-205ENST00000598209 ARHGAP4P98171 946 aa15.82■□□□□ 0.12
UPF1-205ENST00000598209 MDM2Q00987 491 aaPredicted RBP15.82■□□□□ 0.12
UPF1-205ENST00000598209 MTMR1Q13613 665 aa15.82■□□□□ 0.12
UPF1-205ENST00000598209 NBPF20Q3BBV1 942 aa15.82■□□□□ 0.12
UPF1-205ENST00000598209 HSDL1Q3SXM5 330 aa15.82■□□□□ 0.12
UPF1-205ENST00000598209 METTL7BQ6UX53 244 aa15.82■□□□□ 0.12
UPF1-205ENST00000598209 CYFIP1Q7L576 1253 aa15.82■□□□□ 0.12
UPF1-205ENST00000598209 LBHD1Q9BQE6 289 aaPredicted RBP15.82■□□□□ 0.12
UPF1-205ENST00000598209 SENP7Q9BQF6 1050 aa15.82■□□□□ 0.12
UPF1-205ENST00000598209 PRO3102Q9H379 93 aa15.82■□□□□ 0.12
UPF1-205ENST00000598209 TMEM39AQ9NV64 488 aa15.82■□□□□ 0.12
UPF1-205ENST00000598209 LIMCH1Q9UPQ0 1083 aa15.82■□□□□ 0.12
UPF1-205ENST00000598209 MAFGO15525 162 aa15.81■□□□□ 0.12
UPF1-205ENST00000598209 CD4P01730 458 aa15.81■□□□□ 0.12
UPF1-205ENST00000598209 HOXD8P13378 290 aaPredicted RBP15.81■□□□□ 0.12
UPF1-205ENST00000598209 KCNA2P16389 499 aa15.81■□□□□ 0.12
UPF1-205ENST00000598209 CHMP4BP1P59074 171 aa15.81■□□□□ 0.12
UPF1-205ENST00000598209 TRIP12Q14669 1992 aaPredicted RBP15.81■□□□□ 0.12
UPF1-205ENST00000598209 FAM177A1Q8N128 213 aaPredicted RBP15.81■□□□□ 0.12
UPF1-205ENST00000598209 GIMAP8Q8ND71 665 aaPredicted RBP15.81■□□□□ 0.12
UPF1-205ENST00000598209 PPP1R13LQ8WUF5 828 aa15.81■□□□□ 0.12
UPF1-205ENST00000598209 KAT2BQ92831 832 aa15.81■□□□□ 0.12
UPF1-205ENST00000598209 ORC3Q9UBD5 711 aaPredicted RBP15.81■□□□□ 0.12
UPF1-205ENST00000598209 PCDHA4Q9UN74 947 aa15.81■□□□□ 0.12
UPF1-205ENST00000598209 NOP56O00567 594 aaKnown RBP15.8■□□□□ 0.12
UPF1-205ENST00000598209 B4GALT4O60513 344 aa15.8■□□□□ 0.12
UPF1-205ENST00000598209 ATP9AO75110 1047 aa15.8■□□□□ 0.12
UPF1-205ENST00000598209 PPFIA4O75335 1185 aa15.8■□□□□ 0.12
UPF1-205ENST00000598209 ZNF286BP0CG31 522 aa15.8■□□□□ 0.12
UPF1-205ENST00000598209 RAG1P15918 1043 aa15.8■□□□□ 0.12
UPF1-205ENST00000598209 BMP8BP34820 402 aa15.8■□□□□ 0.12
UPF1-205ENST00000598209 ZNF76P36508 570 aa15.8■□□□□ 0.12
UPF1-205ENST00000598209 RABEP1Q15276 862 aa15.8■□□□□ 0.12
UPF1-205ENST00000598209 CEP55Q53EZ4 464 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms