RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 CELF3Q5SZQ8 465 aaKnown RBP12.78□□□□□ -0.36
VRK3-210ENST00000596121 CRYGNQ8WXF5 182 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 KAT2BQ92831 832 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 GTF3C6Q969F1 213 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 EMID1Q96A84 441 aaPredicted RBP12.78□□□□□ -0.36
VRK3-210ENST00000596121 TRIM43Q96BQ3 446 aaPredicted RBP12.78□□□□□ -0.36
VRK3-210ENST00000596121 GLT1D1Q96MS3 346 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 ANO3Q9BYT9 981 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 PDLIM7Q9NR12 457 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 RBM27Q9P2N5 1060 aaKnown RBP12.78□□□□□ -0.36
VRK3-210ENST00000596121 COLQQ9Y215 455 aaPredicted RBP12.78□□□□□ -0.36
VRK3-210ENST00000596121 UBIAD1Q9Y5Z9 338 aa12.78□□□□□ -0.36
VRK3-210ENST00000596121 A0A0U1RQG5 324 aaPredicted RBP12.77□□□□□ -0.37
VRK3-210ENST00000596121 JAK2O60674 1132 aa12.77□□□□□ -0.37
VRK3-210ENST00000596121 PQBP1O60828 265 aaKnown RBP12.77□□□□□ -0.37
VRK3-210ENST00000596121 DEXIO95424 95 aa12.77□□□□□ -0.37
VRK3-210ENST00000596121 GGPS1O95749 300 aa12.77□□□□□ -0.37
VRK3-210ENST00000596121 CPT1AP50416 773 aa12.77□□□□□ -0.37
VRK3-210ENST00000596121 ITGA7Q13683 1181 aa12.77□□□□□ -0.37
VRK3-210ENST00000596121 HSDL1Q3SXM5 330 aa12.77□□□□□ -0.37
VRK3-210ENST00000596121 XRRA1Q6P2D8 792 aa12.77□□□□□ -0.37
VRK3-210ENST00000596121 CHRDL2Q6WN34 429 aa12.77□□□□□ -0.37
VRK3-210ENST00000596121 ANKRD33Q7Z3H0 272 aa12.77□□□□□ -0.37
VRK3-210ENST00000596121 DHX37Q8IY37 1157 aaKnown RBP12.77□□□□□ -0.37
VRK3-210ENST00000596121 VTI1AQ96AJ9 217 aa12.77□□□□□ -0.37
VRK3-210ENST00000596121 RBAK-RBAKDNI3L0D1 243 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 M0R2N6 131 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 FIBPO43427 364 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 ZEB2O60315 1214 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 STAM2O75886 525 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 CABYRO75952 493 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 FOSP01100 380 aaPredicted RBP12.76□□□□□ -0.37
VRK3-210ENST00000596121 TGFB3P10600 412 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 HOXD8P13378 290 aaPredicted RBP12.76□□□□□ -0.37
VRK3-210ENST00000596121 SREBF1P36956 1147 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 MAGEA10P43363 369 aaPredicted RBP12.76□□□□□ -0.37
VRK3-210ENST00000596121 LAMC2Q13753 1193 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 KCNV1Q6PIU1 500 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 TEX2Q8IWB9 1127 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 FAM126BQ8IXS8 530 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 TRIM22Q8IYM9 498 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 NSUN7Q8NE18 718 aaKnown RBP12.76□□□□□ -0.37
VRK3-210ENST00000596121 TOX2Q96NM4 488 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 GDF15Q99988 308 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 MTG1Q9BT17 334 aaPredicted RBP12.76□□□□□ -0.37
VRK3-210ENST00000596121 TRPV6Q9H1D0 765 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 C6orf50Q9HD87 102 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 JADE2Q9NQC1 790 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 SH3GLB2Q9NR46 395 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 POLR3EQ9NVU0 708 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 KCNJ14Q9UNX9 436 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 TRIOBPQ9H2D6 2365 aa12.76□□□□□ -0.37
VRK3-210ENST00000596121 MYH7BA7E2Y1 1941 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 FAM86B1E9PN63 330 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 CD2BP2O95400 341 aaKnown RBP12.75□□□□□ -0.37
VRK3-210ENST00000596121 CD4P01730 458 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 FAM86B2P0C5J1 330 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 ARP10275 920 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 KCNA2P16389 499 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 ARHGAP4P98171 946 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 AP3B2Q13367 1082 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 NBPF20Q3BBV1 942 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 GNPTABQ3T906 1256 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 CPLX2Q6PUV4 134 aaKnown RBP12.75□□□□□ -0.37
VRK3-210ENST00000596121 CYFIP1Q7L576 1253 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 REXO1Q8N1G1 1221 aaKnown RBP12.75□□□□□ -0.37
VRK3-210ENST00000596121 PPTC7Q8NI37 304 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 GPRASP2Q96D09 838 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 SPATA33Q96N06 139 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 TBC1D32Q96NH3 1257 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 MXRA8Q9BRK3 442 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 BACH2Q9BYV9 841 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 GLT8D2Q9H1C3 349 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 STK36Q9NRP7 1315 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 PKD2L1Q9P0L9 805 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 LIMCH1Q9UPQ0 1083 aa12.75□□□□□ -0.37
VRK3-210ENST00000596121 SCN10AQ9Y5Y9 1956 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 MEIS1O00470 390 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 KIAA0355O15063 1070 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 CLTBP09497 229 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 ZNF286BP0CG31 522 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 GNA11P29992 359 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 NLRP5P59047 1200 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 MDM2Q00987 491 aaPredicted RBP12.74□□□□□ -0.37
VRK3-210ENST00000596121 HIC1Q14526 733 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 CEP55Q53EZ4 464 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 METTL7BQ6UX53 244 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 NLRX1Q86UT6 975 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 OXER1Q8TDS5 423 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 CCDC12Q8WUD4 166 aaPredicted RBP12.74□□□□□ -0.37
VRK3-210ENST00000596121 UIMC1Q96RL1 719 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 CTAGE1Q96RT6 745 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 GPR20Q99678 358 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 SENP7Q9BQF6 1050 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 C16orf70Q9BSU1 422 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 MLXIPQ9HAP2 919 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 PRDM5Q9NQX1 630 aaPredicted RBP12.74□□□□□ -0.37
VRK3-210ENST00000596121 KCNH7Q9NS40 1196 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 TRMT13Q9NUP7 481 aaKnown RBP12.74□□□□□ -0.37
VRK3-210ENST00000596121 ORC3Q9UBD5 711 aaPredicted RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms