RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 GGPS1O95749 300 aa20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 FOSP01100 380 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 HOXD8P13378 290 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 APOBRQ0VD83 1088 aa20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 SHHQ15465 462 aa20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 MYSM1Q5VVJ2 828 aa20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 WWC2Q6AWC2 1192 aa20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 PSRC1Q6PGN9 363 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 SESTD1Q86VW0 696 aa20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 GPKOWQ92917 476 aaPredicted RBP eCLIP20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 SPATA33Q96N06 139 aa20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 PPP1R12CQ9BZL4 782 aa20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 TRPV6Q9H1D0 765 aa20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 MLXIPQ9HAP2 919 aa20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 ZSWIM6Q9HCJ5 1215 aa20.36■□□□□ 0.85
SHKBP1-204ENST00000594862 hCG_1642624A0A1W2PR95 340 aa20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 SPATA31C2B4DYI2 1134 aa20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 CPA1P15085 419 aa20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 ADCY7P51828 1080 aa20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 EVCP57679 992 aa20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 MRPS9P82933 396 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 MCTP2Q6DN12 878 aa20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 CCDC155Q8N6L0 562 aa20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 GPRASP2Q96D09 838 aa20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 RNPC3Q96LT9 517 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 NOC4LQ9BVI4 516 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 MTIF3Q9H2K0 278 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 RIC8AQ9NPQ8 531 aa20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 BARHL2Q9NY43 387 aa20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 NOD1Q9Y239 953 aa20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 V9GY48 417 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-204ENST00000594862 NOP56O00567 594 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-204ENST00000594862 F2P00734 622 aa20.34■□□□□ 0.85
SHKBP1-204ENST00000594862 CDC27P30260 824 aa20.34■□□□□ 0.85
SHKBP1-204ENST00000594862 AKAP17AQ02040 695 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-204ENST00000594862 AP3B2Q13367 1082 aa20.34■□□□□ 0.85
SHKBP1-204ENST00000594862 METTL7BQ6UX53 244 aa20.34■□□□□ 0.85
SHKBP1-204ENST00000594862 SENP7Q9BQF6 1050 aa20.34■□□□□ 0.85
SHKBP1-204ENST00000594862 FAM217BQ9NTX9 383 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-204ENST00000594862 UNC80Q8N2C7 3258 aa20.34■□□□□ 0.85
SHKBP1-204ENST00000594862 MYH7BA7E2Y1 1941 aa20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 STXBP3O00186 592 aa20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 DLL1O00548 723 aa20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 PITPNM1O00562 1244 aa20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 MAFGO15525 162 aa20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 PFKMP08237 780 aa20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 BFSP2Q13515 415 aa20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 PFKFB3Q16875 520 aaPredicted RBP20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 C9orf50Q5SZB4 431 aa20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 C7orf31Q8N865 590 aa20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 IL23AQ9NPF7 189 aa20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 TRMT13Q9NUP7 481 aaKnown RBP20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 PCDHA6Q9UN73 950 aa20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 PCDHA8Q9Y5H6 950 aa20.33■□□□□ 0.85
SHKBP1-204ENST00000594862 ESYT2A0FGR8 921 aa20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 SCG2P13521 617 aa20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 CSF2RAP15509 400 aa20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 CYP2C18P33260 490 aa20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 RFC2P35250 354 aa20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 ADD1P35611 737 aaKnown RBP20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 PSEN2P49810 448 aa20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 ANAPC15P60006 121 aa20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 SMAD3P84022 425 aaKnown RBP20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 UBE2SQ16763 222 aa20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 FAM109BQ6ICB4 259 aaPredicted RBP20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 RPUSD2Q8IZ73 545 aaKnown RBP20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 KAT2BQ92831 832 aa20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 RNF26Q9BY78 433 aaPredicted RBP20.32■□□□□ 0.84
SHKBP1-204ENST00000594862 SMCO2A6NFE2 343 aa20.31■□□□□ 0.84
SHKBP1-204ENST00000594862 PRPF3O43395 683 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-204ENST00000594862 EPHB4P54760 987 aa20.31■□□□□ 0.84
SHKBP1-204ENST00000594862 SP2Q02086 613 aa20.31■□□□□ 0.84
SHKBP1-204ENST00000594862 MFSD10Q14728 455 aa20.31■□□□□ 0.84
SHKBP1-204ENST00000594862 HSDL1Q3SXM5 330 aa20.31■□□□□ 0.84
SHKBP1-204ENST00000594862 CCDC148Q8NFR7 591 aa20.31■□□□□ 0.84
SHKBP1-204ENST00000594862 CAGE1Q8TC20 777 aa20.31■□□□□ 0.84
SHKBP1-204ENST00000594862 RTEL1Q9NZ71 1219 aa20.31■□□□□ 0.84
SHKBP1-204ENST00000594862 TANC1Q9C0D5 1861 aa20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 HAS3O00219 553 aa20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 ZNF286BP0CG31 522 aa20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 IFNAR1P17181 557 aa20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 CHMP4BP1P59074 171 aa20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 MTMR1Q13613 665 aa20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 PTGISQ16647 500 aa20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 KIAA0753Q2KHM9 967 aa20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 CPLX2Q6PUV4 134 aaKnown RBP20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 TRIM22Q8IYM9 498 aa20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 DEFB123Q8N688 67 aa20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 RETREG2Q8NC44 543 aa20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 ZNF274Q96GC6 653 aaPredicted RBP20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 C6orf50Q9HD87 102 aa20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 GTF2IRD1Q9UHL9 959 aa20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 ZNF215Q9UL58 517 aaPredicted RBP20.3■□□□□ 0.84
SHKBP1-204ENST00000594862 PARNO95453 639 aaKnown RBP20.29■□□□□ 0.84
SHKBP1-204ENST00000594862 GNA11P29992 359 aa20.29■□□□□ 0.84
SHKBP1-204ENST00000594862 PDIA3P30101 505 aaKnown RBP20.29■□□□□ 0.84
SHKBP1-204ENST00000594862 TYW1BQ6NUM6 668 aa20.29■□□□□ 0.84
SHKBP1-204ENST00000594862 Q7L0L9 218 aa20.29■□□□□ 0.84
SHKBP1-204ENST00000594862 BICD2Q8TD16 824 aa20.29■□□□□ 0.84
SHKBP1-204ENST00000594862 ZFP91Q96JP5 570 aaPredicted RBP20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms