RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 GRID2IPA4D2P6 1211 aa16.4■□□□□ 0.22
SMARCA4-219ENST00000592604 BUB1O43683 1085 aa16.4■□□□□ 0.22
SMARCA4-219ENST00000592604 ERLIN2O94905 339 aa16.4■□□□□ 0.22
SMARCA4-219ENST00000592604 DYMQ7RTS9 669 aa16.4■□□□□ 0.22
SMARCA4-219ENST00000592604 C1orf131Q8NDD1 294 aaKnown RBP16.4■□□□□ 0.22
SMARCA4-219ENST00000592604 RAD54LQ92698 747 aa16.4■□□□□ 0.22
SMARCA4-219ENST00000592604 MS4A14Q96JA4 679 aa16.4■□□□□ 0.22
SMARCA4-219ENST00000592604 TSG101Q99816 390 aa16.4■□□□□ 0.22
SMARCA4-219ENST00000592604 NAV1Q8NEY1 1877 aa16.4■□□□□ 0.22
SMARCA4-219ENST00000592604 SERPING1P05155 500 aa16.4■□□□□ 0.22
SMARCA4-219ENST00000592604 SLC9C1Q4G0N8 1177 aa16.4■□□□□ 0.22
SMARCA4-219ENST00000592604 REXO1Q8N1G1 1221 aaKnown RBP16.4■□□□□ 0.22
SMARCA4-219ENST00000592604 JAG2Q9Y219 1238 aa16.4■□□□□ 0.22
SMARCA4-219ENST00000592604 A0A0G2JS52 829 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 ZEB2O60315 1214 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 NOL4O94818 638 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 BAG3O95817 575 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 LDHBP07195 334 aaKnown RBP16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 CARSP49589 748 aaKnown RBP16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 PAK2Q13177 524 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 NAB2Q15742 525 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 CALCRLQ16602 461 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 ZCWPW2Q504Y3 356 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 KDM7AQ6ZMT4 941 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 MMS22LQ6ZRQ5 1243 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 NLRP3Q96P20 1036 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 ZNF287Q9HBT7 754 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 BIN2Q9UBW5 565 aaPredicted RBP16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 TLR2O60603 784 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 GTF2A1P52655 376 aaPredicted RBP16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 ATP2B2Q01814 1243 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 DDB1Q16531 1140 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 CFAP58Q5T655 872 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 WDR66Q8TBY9 1149 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 CDK5RAP3Q96JB5 506 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 LUC7LQ9NQ29 371 aaKnown RBP16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 SEC63Q9UGP8 760 aaKnown RBP16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 GUCY2CP25092 1073 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 TMEM266Q2M3C6 531 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 SFMBT2Q5VUG0 894 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 NEDD1Q8NHV4 660 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 DDX12PQ92771 950 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 RAB34Q9BZG1 259 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 NFU1Q9UMS0 254 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 PCDHGC5Q9Y5F6 944 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 COL4A3BPQ9Y5P4 624 aa16.39■□□□□ 0.21
SMARCA4-219ENST00000592604 ZNF233A6NK53 670 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 hCG_1984214I3L0E3 225 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 EDIL3O43854 480 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 HEXIM1O94992 359 aaKnown RBP16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 GSTO1P78417 241 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 FKBP3Q00688 224 aaKnown RBP16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 TMEM119Q4V9L6 283 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 TDRD12Q587J7 1177 aaKnown RBP16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 FAM83BQ5T0W9 1011 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 USP17L2Q6R6M4 530 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 B4GALNT4Q76KP1 1039 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 SPATS2Q86XZ4 545 aaKnown RBP16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 ZNF713Q8N859 430 aaPredicted RBP16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 TGFBRAP1Q8WUH2 860 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 PIK3R5Q8WYR1 880 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 CCDC43Q96MW1 224 aaKnown RBP16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 PIGSQ96S52 555 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 EPB41L5Q9HCM4 733 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 PALMO75781 387 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 FAM153BP0C7A2 387 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 LIG3P49916 1009 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 NAP1L1P55209 391 aaKnown RBP16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 PDCLQ13371 301 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 FAM153CQ494X1 144 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 MEI1Q5TIA1 1274 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 TTC19Q6DKK2 380 aaPredicted RBP16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 MARCH10Q8NA82 808 aaPredicted RBP16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 FAM153AQ9UHL3 310 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 ATP6V0A2Q9Y487 856 aa16.38■□□□□ 0.21
SMARCA4-219ENST00000592604 SNED1Q8TER0 1413 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 KRT14P02533 472 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 SEPT2Q15019 361 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 CDC37Q16543 378 aaPredicted RBP16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 TBC1D9BQ66K14 1250 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 MYOCDQ8IZQ8 938 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 KAT2BQ92831 832 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 INPP4AQ96PE3 977 aaPredicted RBP16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 PAGR1Q9BTK6 254 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 TANGO6Q9C0B7 1094 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 NYXQ9GZU5 481 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 RIOX1Q9H6W3 641 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 NLRC4Q9NPP4 1024 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 TMEM260Q9NX78 707 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 ATAD5Q96QE3 1844 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 NOVP48745 357 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 GUCY2DQ02846 1103 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 LRRC41Q15345 812 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 SLC18A3Q16572 532 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 BICDL1Q6ZP65 573 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 C16orf86Q6ZW13 317 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 GPIHBP1Q8IV16 184 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 GLIS3Q8NEA6 775 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 WHAMMQ8TF30 809 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 EYA3Q99504 573 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms