RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 MTRQ99707 1265 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 TMEM106CQ9BVX2 250 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 UBA5Q9GZZ9 404 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 JMJD4Q9H9V9 463 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 GPCPD1Q9NPB8 672 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 FRMPD2Q68DX3 1309 aaPredicted RBP11.84□□□□□ -0.51
ZNF540-208ENST00000589857 TEX33O43247 280 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 URI1O94763 535 aaPredicted RBP11.83□□□□□ -0.52
ZNF540-208ENST00000589857 CASP1P29466 404 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 CASP14P31944 242 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 CCT6AP40227 531 aaKnown RBP11.83□□□□□ -0.52
ZNF540-208ENST00000589857 TECP42680 631 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 TXKP42681 527 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 KRT83P78385 493 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 LRRC63Q05C16 580 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 MKRN3Q13064 507 aaKnown RBP11.83□□□□□ -0.52
ZNF540-208ENST00000589857 NBPF9Q3BBW0 867 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 CERKLQ49MI3 558 aaPredicted RBP11.83□□□□□ -0.52
ZNF540-208ENST00000589857 SPRYD7Q5W111 196 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 TRIM65Q6PJ69 517 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 MOB2Q70IA6 237 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 RASGRP2Q7LDG7 609 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 MB21D1Q8N884 522 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 GMCL1P1Q8NEA9 526 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 OR8K1Q8NGG5 319 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 ERMNQ8TAM6 284 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 LARP4BQ92615 738 aaKnown RBP11.83□□□□□ -0.52
ZNF540-208ENST00000589857 VPS16Q9H269 839 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 PSTPIP2Q9H939 334 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 DDX4Q9NQI0 724 aaKnown RBP11.83□□□□□ -0.52
ZNF540-208ENST00000589857 TAB2Q9NYJ8 693 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 OGFRQ9NZT2 677 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 DDX25Q9UHL0 483 aaKnown RBP11.83□□□□□ -0.52
ZNF540-208ENST00000589857 LUC7L2Q9Y383 392 aaKnown RBP11.83□□□□□ -0.52
ZNF540-208ENST00000589857 ADGRG1Q9Y653 693 aa11.83□□□□□ -0.52
ZNF540-208ENST00000589857 TBX3O15119 743 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 GYPCP04921 128 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 CYLC1P35663 651 aaPredicted RBP11.82□□□□□ -0.52
ZNF540-208ENST00000589857 SLC1A4P43007 532 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 CLK2P49760 499 aaKnown RBP11.82□□□□□ -0.52
ZNF540-208ENST00000589857 RBM5P52756 815 aaKnown RBP eCLIP11.82□□□□□ -0.52
ZNF540-208ENST00000589857 ATP2B2Q01814 1243 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 TMEM119Q4V9L6 283 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 FIGNQ5HY92 759 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 DACT2Q5SW24 774 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 HAUS3Q68CZ6 603 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 SLFN13Q68D06 897 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 TTI2Q6NXR4 508 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 GUF1Q8N442 669 aaKnown RBP11.82□□□□□ -0.52
ZNF540-208ENST00000589857 SNX29Q8TEQ0 813 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 RAD54LQ92698 747 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 GMCL1Q96IK5 515 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 ABHD10Q9NUJ1 306 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 GDAQ9Y2T3 454 aa11.82□□□□□ -0.52
ZNF540-208ENST00000589857 TNRC18O15417 2968 aaPredicted RBP11.81□□□□□ -0.52
ZNF540-208ENST00000589857 A0A1W2PQJ5 194 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 PP2D1A8MPX8 630 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 PES1O00541 588 aaKnown RBP11.81□□□□□ -0.52
ZNF540-208ENST00000589857 TUBBP07437 444 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 CDC25AP30304 524 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 KRT9P35527 623 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 MTIF2P46199 727 aaKnown RBP11.81□□□□□ -0.52
ZNF540-208ENST00000589857 IREB2P48200 963 aaKnown RBP11.81□□□□□ -0.52
ZNF540-208ENST00000589857 ICA1Q05084 483 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 DLGAP5Q15398 846 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 HYIQ5T013 277 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 LDLRAD1Q5T700 205 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 PRAMEF18Q5VWM3 479 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 TATDN1Q6P1N9 297 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 TOGARAM2Q6ZUX3 1019 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 CCDC84Q86UT8 332 aaPredicted RBP11.81□□□□□ -0.52
ZNF540-208ENST00000589857 IFNL1Q8IU54 200 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 ZSCAN29Q8IWY8 852 aaPredicted RBP11.81□□□□□ -0.52
ZNF540-208ENST00000589857 CCDC170Q8IYT3 715 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 CEP112Q8N8E3 955 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 CPLX3Q8WVH0 158 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 COA7Q96BR5 231 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 AMNQ9BXJ7 453 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 EHMT1Q9H9B1 1298 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 HERC5Q9UII4 1024 aaKnown RBP11.81□□□□□ -0.52
ZNF540-208ENST00000589857 CAPN11Q9UMQ6 739 aa11.81□□□□□ -0.52
ZNF540-208ENST00000589857 ATRNL1Q5VV63 1379 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 CYP3A7-CYP3A51PA0A087WV96 503 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 CTAGE9A4FU28 777 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 ADAMTS3O15072 1205 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 ATP8B1O43520 1251 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 GNA14O95837 355 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 CYP3A7P24462 503 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 GRB10Q13322 594 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 PRKG1Q13976 671 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 ABCB5Q2M3G0 1257 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 ZNF662Q6ZS27 426 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 OTOP1Q7RTM1 612 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 CREBRFQ8IUR6 639 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 CCDC65Q8IXS2 484 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 TSC1Q92574 1164 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 GOLGA1Q92805 767 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 CNOT6LQ96LI5 555 aaKnown RBP11.8□□□□□ -0.52
ZNF540-208ENST00000589857 DNAJC7Q99615 494 aa11.8□□□□□ -0.52
ZNF540-208ENST00000589857 TUBGCP2Q9BSJ2 902 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms