RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PLEKHH3Q7Z736 793 aa28.34■■■□□ 2.13
SHMT1-207ENST00000580002 POLR2DO15514 142 aaKnown RBP28.34■■■□□ 2.13
SHMT1-207ENST00000580002 SYKP43405 635 aa28.34■■■□□ 2.13
SHMT1-207ENST00000580002 SPIRE1Q08AE8 756 aa28.34■■■□□ 2.13
SHMT1-207ENST00000580002 LONRF3Q496Y0 759 aa28.34■■■□□ 2.13
SHMT1-207ENST00000580002 EEPD1Q7L9B9 569 aa28.34■■■□□ 2.13
SHMT1-207ENST00000580002 LRRC15Q8TF66 581 aa28.34■■■□□ 2.13
SHMT1-207ENST00000580002 SLC5A5Q92911 643 aa28.34■■■□□ 2.13
SHMT1-207ENST00000580002 ZNF577Q9BSK1 485 aa28.34■■■□□ 2.13
SHMT1-207ENST00000580002 ITGB3BPQ13352 177 aaPredicted RBP28.33■■■□□ 2.13
SHMT1-207ENST00000580002 KARSQ15046 597 aaKnown RBP28.33■■■□□ 2.13
SHMT1-207ENST00000580002 ZNF792Q3KQV3 632 aa28.33■■■□□ 2.13
SHMT1-207ENST00000580002 AGO4Q9HCK5 861 aaKnown RBP28.33■■■□□ 2.13
SHMT1-207ENST00000580002 FAM13BQ9NYF5 915 aa28.33■■■□□ 2.13
SHMT1-207ENST00000580002 VAV3Q9UKW4 847 aa28.33■■■□□ 2.13
SHMT1-207ENST00000580002 TBX3O15119 743 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 EDNRBP24530 442 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 MAPK4P31152 587 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 MTMR1Q13613 665 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 ZRSR1Q15695 479 aaKnown RBP28.32■■■□□ 2.12
SHMT1-207ENST00000580002 ERCC4Q92889 916 aaPredicted RBP28.32■■■□□ 2.12
SHMT1-207ENST00000580002 FAM20AQ96MK3 541 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 IWS1Q96ST2 819 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 LRWD1Q9UFC0 647 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 IVNS1ABPQ9Y6Y0 642 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 DDX39AO00148 427 aaKnown RBP28.32■■■□□ 2.12
SHMT1-207ENST00000580002 EML1O00423 815 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 PSMD10O75832 226 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 CAP1Q01518 475 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 GRB14Q14449 540 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 SLFN12Q8IYM2 578 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 INPP4AQ96PE3 977 aaPredicted RBP28.32■■■□□ 2.12
SHMT1-207ENST00000580002 ARHGAP39Q9C0H5 1083 aa28.32■■■□□ 2.12
SHMT1-207ENST00000580002 ADD3Q9UEY8 706 aaKnown RBP28.32■■■□□ 2.12
SHMT1-207ENST00000580002 DOCK3Q8IZD9 2030 aa28.31■■■□□ 2.12
SHMT1-207ENST00000580002 DHX15O43143 795 aaKnown RBP28.31■■■□□ 2.12
SHMT1-207ENST00000580002 STXBP2Q15833 593 aa28.31■■■□□ 2.12
SHMT1-207ENST00000580002 ECM1Q16610 540 aa28.31■■■□□ 2.12
SHMT1-207ENST00000580002 NIPA1Q7RTP0 329 aa28.31■■■□□ 2.12
SHMT1-207ENST00000580002 SERTAD1Q9UHV2 236 aa28.31■■■□□ 2.12
SHMT1-207ENST00000580002 TELO2Q9Y4R8 837 aa28.31■■■□□ 2.12
SHMT1-207ENST00000580002 PLXNB2O15031 1838 aa28.31■■■□□ 2.12
SHMT1-207ENST00000580002 IPO5O00410 1097 aaKnown RBP28.3■■■□□ 2.12
SHMT1-207ENST00000580002 FOXN1O15353 648 aa28.3■■■□□ 2.12
SHMT1-207ENST00000580002 STRNO43815 780 aa28.3■■■□□ 2.12
SHMT1-207ENST00000580002 SORBS3O60504 671 aa28.3■■■□□ 2.12
SHMT1-207ENST00000580002 SETQ01105 290 aaPredicted RBP28.3■■■□□ 2.12
SHMT1-207ENST00000580002 PDIA5Q14554 519 aa28.3■■■□□ 2.12
SHMT1-207ENST00000580002 TMEM266Q2M3C6 531 aa28.3■■■□□ 2.12
SHMT1-207ENST00000580002 LRCH2Q5VUJ6 765 aa28.3■■■□□ 2.12
SHMT1-207ENST00000580002 XRRA1Q6P2D8 792 aa28.3■■■□□ 2.12
SHMT1-207ENST00000580002 NPLOC4Q8TAT6 608 aa28.3■■■□□ 2.12
SHMT1-207ENST00000580002 DHX58Q96C10 678 aa28.3■■■□□ 2.12
SHMT1-207ENST00000580002 TRPA1O75762 1119 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 NCAPH2Q6IBW4 605 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 SEPT14Q6ZU15 432 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 OTOP1Q7RTM1 612 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 CABP7Q86V35 215 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 CLSTN2Q9H4D0 955 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 CHMP2AO43633 222 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 UBA7P41226 1012 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 SP2Q02086 613 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 PDE4DQ08499 809 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 ZSCAN23Q3MJ62 389 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 CCDC183Q5T5S1 534 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 GRAMD1CQ8IYS0 662 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 ABRAQ8N0Z2 381 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 UNC45AQ9H3U1 944 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 RNF186Q9NXI6 227 aa28.29■■■□□ 2.12
SHMT1-207ENST00000580002 A0A087WWV3 80 aa28.28■■■□□ 2.12
SHMT1-207ENST00000580002 EIF3JO75822 258 aaKnown RBP28.28■■■□□ 2.12
SHMT1-207ENST00000580002 MORN1Q5T089 497 aa28.28■■■□□ 2.12
SHMT1-207ENST00000580002 DPP9Q86TI2 863 aa28.28■■■□□ 2.12
SHMT1-207ENST00000580002 PNMA5Q96PV4 448 aa28.28■■■□□ 2.12
SHMT1-207ENST00000580002 DDX19AQ9NUU7 478 aaKnown RBP28.28■■■□□ 2.12
SHMT1-207ENST00000580002 GAS7O60861 476 aa28.27■■■□□ 2.12
SHMT1-207ENST00000580002 KINO60870 393 aaKnown RBP28.27■■■□□ 2.12
SHMT1-207ENST00000580002 ALDH1A1P00352 501 aa28.27■■■□□ 2.12
SHMT1-207ENST00000580002 E2F4Q16254 413 aa28.27■■■□□ 2.12
SHMT1-207ENST00000580002 TMEM63BQ5T3F8 832 aa28.27■■■□□ 2.12
SHMT1-207ENST00000580002 CKAP2LQ8IYA6 745 aa28.27■■■□□ 2.12
SHMT1-207ENST00000580002 AK8Q96MA6 479 aa28.27■■■□□ 2.12
SHMT1-207ENST00000580002 CCSER1Q9C0I3 900 aa28.27■■■□□ 2.12
SHMT1-207ENST00000580002 NUP62CLQ9H1M0 184 aa28.27■■■□□ 2.12
SHMT1-207ENST00000580002 ACTN4O43707 911 aaKnown RBP28.27■■■□□ 2.12
SHMT1-207ENST00000580002 GRB10Q13322 594 aa28.27■■■□□ 2.12
SHMT1-207ENST00000580002 GPRASP2Q96D09 838 aa28.27■■■□□ 2.12
SHMT1-207ENST00000580002 SYCE3A1L190 88 aa28.26■■■□□ 2.11
SHMT1-207ENST00000580002 SLC15A5A6NIM6 579 aa28.26■■■□□ 2.11
SHMT1-207ENST00000580002 MAP2K2P36507 400 aa28.26■■■□□ 2.11
SHMT1-207ENST00000580002 NAALADL2Q58DX5 795 aa28.26■■■□□ 2.11
SHMT1-207ENST00000580002 B3GNT9Q6UX72 402 aa28.26■■■□□ 2.11
SHMT1-207ENST00000580002 KRBA2Q6ZNG9 492 aa28.26■■■□□ 2.11
SHMT1-207ENST00000580002 NLRX1Q86UT6 975 aa28.26■■■□□ 2.11
SHMT1-207ENST00000580002 FBXO16Q8IX29 292 aaPredicted RBP28.26■■■□□ 2.11
SHMT1-207ENST00000580002 SNX29Q8TEQ0 813 aa28.26■■■□□ 2.11
SHMT1-207ENST00000580002 STAMQ92783 540 aa28.26■■■□□ 2.11
SHMT1-207ENST00000580002 ZSWIM8A7E2V4 1837 aa28.26■■■□□ 2.11
SHMT1-207ENST00000580002 MCM3APO60318 1980 aa28.25■■■□□ 2.11
SHMT1-207ENST00000580002 SPATA31C2B4DYI2 1134 aa28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms