RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PSMD14O00487 310 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 SLC26A4O43511 780 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 APBA3O96018 575 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 PLA2G4AP47712 749 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 STYK1Q6J9G0 422 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 LRRC55Q6ZSA7 311 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 EIF3CQ99613 913 aaKnown RBP11.2□□□□□ -0.62
VPS53-220ENST00000576149 MYO6Q9UM54 1294 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 MYH7BA7E2Y1 1941 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 H0YIN7 160 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 MEIS2O14770 477 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 HNRNPH3P31942 346 aaKnown RBP11.2□□□□□ -0.62
VPS53-220ENST00000576149 ICA1Q05084 483 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 COASYQ13057 564 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 AP3B2Q13367 1082 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 LRRC41Q15345 812 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 CCDC122Q5T0U0 273 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 MSL1Q68DK7 614 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 MOXD1Q6UVY6 613 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 MYOCDQ8IZQ8 938 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 GLIS3Q8NEA6 775 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 CRYGNQ8WXF5 182 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 TSG101Q99816 390 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 TRIM34Q9BYJ4 488 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 ARFGAP3Q9NP61 516 aa11.2□□□□□ -0.62
VPS53-220ENST00000576149 BMP2KQ9NSY1 1161 aaPredicted RBP11.2□□□□□ -0.62
VPS53-220ENST00000576149 CCDC151A5D8V7 595 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 F5H6K3 240 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 TBC1D8O95759 1140 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 TFRCP02786 760 aaKnown RBP11.19□□□□□ -0.62
VPS53-220ENST00000576149 SETQ01105 290 aaPredicted RBP11.19□□□□□ -0.62
VPS53-220ENST00000576149 KLRC3Q07444 240 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 BRD3Q15059 726 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 KIAA1328Q86T90 577 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 CCDC84Q86UT8 332 aaPredicted RBP11.19□□□□□ -0.62
VPS53-220ENST00000576149 MSANTD4Q8NCY6 345 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 GMCL1P1Q8NEA9 526 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 GMCL1Q96IK5 515 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 ANKZF1Q9H8Y5 726 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 PANK4Q9NVE7 773 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 PLAGL2Q9UPG8 496 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 KIAA1024Q9UPX6 916 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 E9PMD0 336 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 POTEB2H3BUK9 544 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 KRT86O43790 486 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 PLA2G4BP0C869 781 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 ABCB5Q2M3G0 1257 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 ZCWPW2Q504Y3 356 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 FAM26FQ5R3K3 315 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 MCTP2Q6DN12 878 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 TRAPPC11Q7Z392 1133 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 SLFN12Q8IYM2 578 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 EHBP1Q8NDI1 1231 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 JAKMIP2Q96AA8 810 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 P2RX7Q99572 595 aaKnown RBP11.19□□□□□ -0.62
VPS53-220ENST00000576149 AMNQ9BXJ7 453 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 TFR2Q9UP52 801 aa11.19□□□□□ -0.62
VPS53-220ENST00000576149 ZNF646O15015 1829 aaPredicted RBP11.18□□□□□ -0.62
VPS53-220ENST00000576149 ATRNL1Q5VV63 1379 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 SCN9AQ15858 1988 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 CTAGE15A4D2H0 777 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 RCCD1A6NED2 376 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 EPHB6O15197 1021 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 SASH3O75995 380 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 IPO7O95373 1038 aaKnown RBP11.18□□□□□ -0.62
VPS53-220ENST00000576149 NDUFB10O96000 172 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 CTAGE8P0CG41 777 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 FKBP3Q00688 224 aaKnown RBP11.18□□□□□ -0.62
VPS53-220ENST00000576149 TERF2Q15554 542 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 CTAGE6Q86UF2 777 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 CTAGE4Q8IX94 777 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 LACRTQ9GZZ8 138 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 PRDM4Q9UKN5 801 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 RAB21Q9UL25 225 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 PCDHA2Q9Y5H9 948 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 ARFGEF1Q9Y6D6 1849 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 POTEB3A0JP26 581 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 POTECB2RU33 542 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 ENTPD3O75355 529 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 GDF11O95390 407 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 SSBP05455 408 aaKnown RBP eCLIP11.18□□□□□ -0.62
VPS53-220ENST00000576149 ARHGAP4P98171 946 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 PAPD7Q5XG87 772 aaKnown RBP11.18□□□□□ -0.62
VPS53-220ENST00000576149 POTEBQ6S5H4 581 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 CCDC65Q8IXS2 484 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 ETNPPLQ8TBG4 499 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 HNRNPLLQ8WVV9 542 aaKnown RBP11.18□□□□□ -0.62
VPS53-220ENST00000576149 PURBQ96QR8 312 aaKnown RBP11.18□□□□□ -0.62
VPS53-220ENST00000576149 UIMC1Q96RL1 719 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 ST7Q9NRC1 585 aa11.18□□□□□ -0.62
VPS53-220ENST00000576149 FAM207AQ9NSI2 230 aaPredicted RBP11.18□□□□□ -0.62
VPS53-220ENST00000576149 TBX3O15119 743 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 MED24O75448 989 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 CYP11B2P19099 503 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 MMP14P50281 582 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 VAV2P52735 878 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 SPIRE1Q08AE8 756 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 Q4G0T1 1027 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 SYDE2Q5VT97 1194 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 FBXO11Q86XK2 927 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms