RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 SIX5Q8N196 739 aa8.4□□□□□ -1.06
CHD3-213ENST00000571249 FIBCD1Q8N539 461 aa8.4□□□□□ -1.06
CHD3-213ENST00000571249 GPR161Q8N6U8 529 aaKnown RBP8.4□□□□□ -1.06
CHD3-213ENST00000571249 WNT8BQ93098 351 aa8.4□□□□□ -1.06
CHD3-213ENST00000571249 CCDC97Q96F63 343 aaPredicted RBP8.4□□□□□ -1.06
CHD3-213ENST00000571249 EHD4Q9H223 541 aa8.4□□□□□ -1.06
CHD3-213ENST00000571249 PPP1R9AQ9ULJ8 1098 aa8.4□□□□□ -1.06
CHD3-213ENST00000571249 Q9Y3F1 56 aa8.4□□□□□ -1.06
CHD3-213ENST00000571249 SCN10AQ9Y5Y9 1956 aa8.39□□□□□ -1.07
CHD3-213ENST00000571249 PARP14Q460N5 1801 aa8.39□□□□□ -1.07
CHD3-213ENST00000571249 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.39□□□□□ -1.07
CHD3-213ENST00000571249 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.39□□□□□ -1.07
CHD3-213ENST00000571249 POTEMA6NI47 508 aa8.39□□□□□ -1.07
CHD3-213ENST00000571249 WDR46O15213 610 aaKnown RBP8.39□□□□□ -1.07
CHD3-213ENST00000571249 KINO60870 393 aaKnown RBP8.39□□□□□ -1.07
CHD3-213ENST00000571249 DCNP07585 359 aaKnown RBP8.39□□□□□ -1.07
CHD3-213ENST00000571249 ZNF618Q5T7W0 954 aa8.39□□□□□ -1.07
CHD3-213ENST00000571249 POTEGQ6S5H5 508 aa8.39□□□□□ -1.07
CHD3-213ENST00000571249 KIAA1211Q6ZU35 1233 aa8.39□□□□□ -1.07
CHD3-213ENST00000571249 MAML2Q8IZL2 1156 aaPredicted RBP8.39□□□□□ -1.07
CHD3-213ENST00000571249 ATP8B4Q8TF62 1192 aa8.39□□□□□ -1.07
CHD3-213ENST00000571249 IL17RAQ96F46 866 aa8.39□□□□□ -1.07
CHD3-213ENST00000571249 TEX13BQ9BXU2 312 aa8.39□□□□□ -1.07
CHD3-213ENST00000571249 VCPKMTQ9H867 229 aa8.39□□□□□ -1.07
CHD3-213ENST00000571249 GPHNQ9NQX3 736 aaPredicted RBP8.39□□□□□ -1.07
CHD3-213ENST00000571249 CELSR3Q9NYQ7 3312 aa8.39□□□□□ -1.07
CHD3-213ENST00000571249 ANKRD17O75179 2603 aaKnown RBP8.38□□□□□ -1.07
CHD3-213ENST00000571249 GDF9O60383 454 aa8.38□□□□□ -1.07
CHD3-213ENST00000571249 ITGB1P05556 798 aa8.38□□□□□ -1.07
CHD3-213ENST00000571249 USP5P45974 858 aa8.38□□□□□ -1.07
CHD3-213ENST00000571249 EXOSC9Q06265 439 aaKnown RBP8.38□□□□□ -1.07
CHD3-213ENST00000571249 FAM83BQ5T0W9 1011 aa8.38□□□□□ -1.07
CHD3-213ENST00000571249 SYCE2Q6PIF2 218 aa8.38□□□□□ -1.07
CHD3-213ENST00000571249 PARP9Q8IXQ6 854 aa8.38□□□□□ -1.07
CHD3-213ENST00000571249 CCDC155Q8N6L0 562 aa8.38□□□□□ -1.07
CHD3-213ENST00000571249 ADAM32Q8TC27 787 aa8.38□□□□□ -1.07
CHD3-213ENST00000571249 SPPL3Q8TCT6 385 aa8.38□□□□□ -1.07
CHD3-213ENST00000571249 NEUROD6Q96NK8 337 aa8.38□□□□□ -1.07
CHD3-213ENST00000571249 BBC3Q96PG8 261 aaPredicted RBP8.38□□□□□ -1.07
CHD3-213ENST00000571249 IFIH1Q9BYX4 1025 aaKnown RBP8.38□□□□□ -1.07
CHD3-213ENST00000571249 USP44Q9H0E7 712 aa8.38□□□□□ -1.07
CHD3-213ENST00000571249 RAVER2Q9HCJ3 691 aaKnown RBP8.38□□□□□ -1.07
CHD3-213ENST00000571249 PA2G4Q9UQ80 394 aaKnown RBP8.38□□□□□ -1.07
CHD3-213ENST00000571249 TMX2Q9Y320 296 aa8.38□□□□□ -1.07
CHD3-213ENST00000571249 NR2E1Q9Y466 385 aa8.38□□□□□ -1.07
CHD3-213ENST00000571249 FANCIQ9NVI1 1328 aa8.37□□□□□ -1.07
CHD3-213ENST00000571249 PTPN11Q06124 597 aaPredicted RBP8.37□□□□□ -1.07
CHD3-213ENST00000571249 SPEM2Q0P670 501 aa8.37□□□□□ -1.07
CHD3-213ENST00000571249 DUSP28Q4G0W2 176 aa8.37□□□□□ -1.07
CHD3-213ENST00000571249 GORABQ5T7V8 394 aa8.37□□□□□ -1.07
CHD3-213ENST00000571249 C1orf210Q8IVY1 113 aa8.37□□□□□ -1.07
CHD3-213ENST00000571249 PPP2R3CQ969Q6 453 aa8.37□□□□□ -1.07
CHD3-213ENST00000571249 PURBQ96QR8 312 aaKnown RBP8.37□□□□□ -1.07
CHD3-213ENST00000571249 NUP88Q99567 741 aaPredicted RBP8.37□□□□□ -1.07
CHD3-213ENST00000571249 POMKQ9H5K3 350 aa8.37□□□□□ -1.07
CHD3-213ENST00000571249 TLE6Q9H808 572 aa8.37□□□□□ -1.07
CHD3-213ENST00000571249 ARHGEF10LQ9HCE6 1279 aa8.37□□□□□ -1.07
CHD3-213ENST00000571249 HOMER2Q9NSB8 354 aa8.37□□□□□ -1.07
CHD3-213ENST00000571249 TEX15Q9BXT5 2789 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 IL16Q14005 1332 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 KRBA1A5PL33 1030 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 ANP32CO43423 234 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 PARNO95453 639 aaKnown RBP8.36□□□□□ -1.07
CHD3-213ENST00000571249 WEE2P0C1S8 567 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 SPINK2P20155 84 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 TECP42680 631 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 RBL2Q08999 1139 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 TFCP2Q12800 502 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 TRIM71Q2Q1W2 868 aaKnown RBP8.36□□□□□ -1.07
CHD3-213ENST00000571249 TMCO4Q5TGY1 634 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 LARP1BQ659C4 914 aaKnown RBP8.36□□□□□ -1.07
CHD3-213ENST00000571249 TMEM179Q6ZVK1 233 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 WWC1Q8IX03 1113 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 OR6J1Q8NGC5 347 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 NETO1Q8TDF5 533 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 POF1BQ8WVV4 589 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 COPS5Q92905 334 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 CLP1Q92989 425 aaKnown RBP8.36□□□□□ -1.07
CHD3-213ENST00000571249 NEK1Q96PY6 1258 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 TMEM121BQ9BXQ6 578 aaPredicted RBP8.36□□□□□ -1.07
CHD3-213ENST00000571249 WDR11Q9BZH6 1224 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 SH2D4AQ9H788 454 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 SNRKQ9NRH2 765 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 FBXL21Q9UKT6 434 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 SMG5Q9UPR3 1016 aaKnown RBP8.36□□□□□ -1.07
CHD3-213ENST00000571249 AKAP2Q9Y2D5 859 aa8.36□□□□□ -1.07
CHD3-213ENST00000571249 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.36□□□□□ -1.07
CHD3-213ENST00000571249 ABCA12Q86UK0 2595 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 CFAP46Q8IYW2 2715 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 ASB14A6NK59 587 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 GPR37O15354 613 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 PPFIA3O75145 1194 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 POLR3DP05423 398 aaPredicted RBP8.35□□□□□ -1.07
CHD3-213ENST00000571249 GLULP15104 373 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 ARID4AP29374 1257 aaPredicted RBP8.35□□□□□ -1.07
CHD3-213ENST00000571249 RBM25P49756 843 aaKnown RBP8.35□□□□□ -1.07
CHD3-213ENST00000571249 CPT1AP50416 773 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 ICA1Q05084 483 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 GABPAQ06546 454 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 CCDC6Q16204 474 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms