RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 GTF2F1P35269 517 aaKnown RBP eCLIP21.38■■□□□ 1.01
CLK3-227ENST00000570296 PSEN2P49810 448 aa21.38■■□□□ 1.01
CLK3-227ENST00000570296 ARHGAP1Q07960 439 aa21.38■■□□□ 1.01
CLK3-227ENST00000570296 FIBCD1Q8N539 461 aa21.38■■□□□ 1.01
CLK3-227ENST00000570296 SMRP1Q8NCR6 262 aa21.38■■□□□ 1.01
CLK3-227ENST00000570296 SEPT8Q92599 483 aa21.38■■□□□ 1.01
CLK3-227ENST00000570296 CHMP4CQ96CF2 233 aa21.38■■□□□ 1.01
CLK3-227ENST00000570296 KIF1BPQ96EK5 621 aa21.38■■□□□ 1.01
CLK3-227ENST00000570296 KDM4AO75164 1064 aa21.37■■□□□ 1.01
CLK3-227ENST00000570296 UPP2O95045 317 aa21.37■■□□□ 1.01
CLK3-227ENST00000570296 BMPR1AP36894 532 aa21.37■■□□□ 1.01
CLK3-227ENST00000570296 COASYQ13057 564 aa21.37■■□□□ 1.01
CLK3-227ENST00000570296 PPP2R3CQ969Q6 453 aa21.37■■□□□ 1.01
CLK3-227ENST00000570296 IL17RAQ96F46 866 aa21.37■■□□□ 1.01
CLK3-227ENST00000570296 IFIH1Q9BYX4 1025 aaKnown RBP21.37■■□□□ 1.01
CLK3-227ENST00000570296 PNMA2Q9UL42 364 aa21.37■■□□□ 1.01
CLK3-227ENST00000570296 EP300Q09472 2414 aaPredicted RBP21.36■■□□□ 1.01
CLK3-227ENST00000570296 F2P00734 622 aa21.36■■□□□ 1.01
CLK3-227ENST00000570296 MMP1P03956 469 aa21.36■■□□□ 1.01
CLK3-227ENST00000570296 ICAM3P32942 547 aa21.36■■□□□ 1.01
CLK3-227ENST00000570296 TDO2P48775 406 aa21.36■■□□□ 1.01
CLK3-227ENST00000570296 RRP1P56182 461 aaKnown RBP21.36■■□□□ 1.01
CLK3-227ENST00000570296 RPS6P62753 249 aaKnown RBP21.36■■□□□ 1.01
CLK3-227ENST00000570296 TFAP4Q01664 338 aa21.36■■□□□ 1.01
CLK3-227ENST00000570296 MFSD10Q14728 455 aa21.36■■□□□ 1.01
CLK3-227ENST00000570296 KIAA0753Q2KHM9 967 aa21.36■■□□□ 1.01
CLK3-227ENST00000570296 CLEC4DQ8WXI8 215 aa21.36■■□□□ 1.01
CLK3-227ENST00000570296 ALG1Q9BT22 464 aa21.36■■□□□ 1.01
CLK3-227ENST00000570296 EPB41L4AQ9HCS5 686 aaPredicted RBP21.36■■□□□ 1.01
CLK3-227ENST00000570296 CACNA1GO43497 2377 aa21.35■■□□□ 1.01
CLK3-227ENST00000570296 HAS3O00219 553 aa21.35■■□□□ 1.01
CLK3-227ENST00000570296 LINC00271P0C7V0 271 aa21.35■■□□□ 1.01
CLK3-227ENST00000570296 SERINC5Q86VE9 423 aa21.35■■□□□ 1.01
CLK3-227ENST00000570296 PHF7Q9BWX1 381 aaPredicted RBP21.35■■□□□ 1.01
CLK3-227ENST00000570296 DMXL1Q9Y485 3027 aa21.35■■□□□ 1.01
CLK3-227ENST00000570296 DNAH14Q0VDD8 3507 aa21.34■■□□□ 1.01
CLK3-227ENST00000570296 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.34■■□□□ 1.01
CLK3-227ENST00000570296 ZNF316A6NFI3 1004 aaPredicted RBP21.34■■□□□ 1.01
CLK3-227ENST00000570296 RBAK-RBAKDNI3L0D1 243 aa21.34■■□□□ 1.01
CLK3-227ENST00000570296 THPOP40225 353 aa21.34■■□□□ 1.01
CLK3-227ENST00000570296 BTNL9Q6UXG8 535 aa21.34■■□□□ 1.01
CLK3-227ENST00000570296 ITPRIPQ8IWB1 547 aa21.34■■□□□ 1.01
CLK3-227ENST00000570296 EFHBQ8N7U6 833 aa21.34■■□□□ 1.01
CLK3-227ENST00000570296 INCENPQ9NQS7 918 aa21.34■■□□□ 1.01
CLK3-227ENST00000570296 CLEC1BQ9P126 229 aa21.34■■□□□ 1.01
CLK3-227ENST00000570296 STX8Q9UNK0 236 aa21.34■■□□□ 1.01
CLK3-227ENST00000570296 GNAT2P19087 354 aa21.33■■□□□ 1.01
CLK3-227ENST00000570296 ZNF200P98182 395 aaPredicted RBP21.33■■□□□ 1.01
CLK3-227ENST00000570296 PTPN21Q16825 1174 aa21.33■■□□□ 1.01
CLK3-227ENST00000570296 LY6KQ17RY6 165 aa21.33■■□□□ 1.01
CLK3-227ENST00000570296 MCTP2Q6DN12 878 aa21.33■■□□□ 1.01
CLK3-227ENST00000570296 RASGRP2Q7LDG7 609 aa21.33■■□□□ 1.01
CLK3-227ENST00000570296 CHST3Q7LGC8 479 aa21.33■■□□□ 1.01
CLK3-227ENST00000570296 DHX37Q8IY37 1157 aaKnown RBP21.33■■□□□ 1.01
CLK3-227ENST00000570296 DCAF4Q8WV16 495 aa21.33■■□□□ 1.01
CLK3-227ENST00000570296 CLP1Q92989 425 aaKnown RBP21.33■■□□□ 1.01
CLK3-227ENST00000570296 NKD2Q969F2 451 aaPredicted RBP21.33■■□□□ 1.01
CLK3-227ENST00000570296 EMID1Q96A84 441 aaPredicted RBP21.33■■□□□ 1.01
CLK3-227ENST00000570296 USP15Q9Y4E8 981 aaPredicted RBP21.33■■□□□ 1.01
CLK3-227ENST00000570296 MYH7BA7E2Y1 1941 aa21.32■■□□□ 1
CLK3-227ENST00000570296 CCDC96Q2M329 555 aa21.32■■□□□ 1
CLK3-227ENST00000570296 SYDE2Q5VT97 1194 aa21.32■■□□□ 1
CLK3-227ENST00000570296 FTSJ3Q8IY81 847 aaKnown RBP21.32■■□□□ 1
CLK3-227ENST00000570296 ADSSL1Q8N142 457 aa21.32■■□□□ 1
CLK3-227ENST00000570296 RIPOR3Q96MK2 946 aa21.32■■□□□ 1
CLK3-227ENST00000570296 PLVAPQ9BX97 442 aa21.32■■□□□ 1
CLK3-227ENST00000570296 SLC3A2P08195 630 aaKnown RBP21.31■■□□□ 1
CLK3-227ENST00000570296 ZNF286BP0CG31 522 aa21.31■■□□□ 1
CLK3-227ENST00000570296 PPTC7Q8NI37 304 aa21.31■■□□□ 1
CLK3-227ENST00000570296 APBB2Q92870 758 aa21.31■■□□□ 1
CLK3-227ENST00000570296 RPGRIP1Q96KN7 1286 aa21.31■■□□□ 1
CLK3-227ENST00000570296 ACACBO00763 2458 aa21.31■■□□□ 1
CLK3-227ENST00000570296 ADGRA3Q8IWK6 1321 aa21.3■■□□□ 1
CLK3-227ENST00000570296 CAND2O75155 1236 aa21.3■■□□□ 1
CLK3-227ENST00000570296 ATF7P17544 494 aaPredicted RBP21.3■■□□□ 1
CLK3-227ENST00000570296 SLC16A2P36021 539 aa21.3■■□□□ 1
CLK3-227ENST00000570296 SEPT14Q6ZU15 432 aa21.3■■□□□ 1
CLK3-227ENST00000570296 PDGFBP01127 241 aaPredicted RBP21.29■■□□□ 1
CLK3-227ENST00000570296 APPP05067 770 aa21.29■■□□□ 1
CLK3-227ENST00000570296 HOXD8P13378 290 aaPredicted RBP21.29■■□□□ 1
CLK3-227ENST00000570296 LAMC2Q13753 1193 aa21.29■■□□□ 1
CLK3-227ENST00000570296 CAMK1Q14012 370 aa21.29■■□□□ 1
CLK3-227ENST00000570296 HIC1Q14526 733 aa21.29■■□□□ 1
CLK3-227ENST00000570296 TTBK2Q6IQ55 1244 aa21.29■■□□□ 1
CLK3-227ENST00000570296 FRMD5Q7Z6J6 570 aa21.29■■□□□ 1
CLK3-227ENST00000570296 RGS22Q8NE09 1264 aa21.29■■□□□ 1
CLK3-227ENST00000570296 APPBP2Q92624 585 aa21.29■■□□□ 1
CLK3-227ENST00000570296 OSBP2Q969R2 916 aa21.29■■□□□ 1
CLK3-227ENST00000570296 RC3H2Q9HBD1 1191 aaKnown RBP21.29■■□□□ 1
CLK3-227ENST00000570296 WDR19Q8NEZ3 1342 aa21.29■■□□□ 1
CLK3-227ENST00000570296 MED19A0JLT2 244 aaPredicted RBP21.28■■□□□ 1
CLK3-227ENST00000570296 GPAA1O43292 621 aa21.28■■□□□ 1
CLK3-227ENST00000570296 P2RX5Q93086 422 aa21.28■■□□□ 1
CLK3-227ENST00000570296 BCL11AQ9H165 835 aa21.28■■□□□ 1
CLK3-227ENST00000570296 DDX41Q9UJV9 622 aaKnown RBP21.28■■□□□ 1
CLK3-227ENST00000570296 PLAGL2Q9UPG8 496 aa21.28■■□□□ 1
CLK3-227ENST00000570296 MTMR7Q9Y216 660 aa21.28■■□□□ 1
CLK3-227ENST00000570296 CEP250Q9BV73 2442 aa21.27■■□□□ 1
CLK3-227ENST00000570296 PATL2C9JE40 543 aaKnown RBP21.27■■□□□ 1
CLK3-227ENST00000570296 KRT37O76014 449 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms