RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 C16orf59Q7L2K0 433 aa23.33■■□□□ 1.33
CLK3-225ENST00000569063 SESTD1Q86VW0 696 aa23.33■■□□□ 1.33
CLK3-225ENST00000569063 RTEL1Q9NZ71 1219 aa23.33■■□□□ 1.33
CLK3-225ENST00000569063 UMODL1Q5DID0 1318 aa23.33■■□□□ 1.32
CLK3-225ENST00000569063 LAMA2P24043 3122 aaKnown RBP23.32■■□□□ 1.32
CLK3-225ENST00000569063 NID2Q14112 1375 aa23.32■■□□□ 1.32
CLK3-225ENST00000569063 hCG_1984214I3L0E3 225 aa23.32■■□□□ 1.32
CLK3-225ENST00000569063 FIBPO43427 364 aa23.32■■□□□ 1.32
CLK3-225ENST00000569063 ADD1P35611 737 aaKnown RBP23.32■■□□□ 1.32
CLK3-225ENST00000569063 HSDL1Q3SXM5 330 aa23.32■■□□□ 1.32
CLK3-225ENST00000569063 ZNF713Q8N859 430 aaPredicted RBP23.32■■□□□ 1.32
CLK3-225ENST00000569063 RNPC3Q96LT9 517 aaKnown RBP23.32■■□□□ 1.32
CLK3-225ENST00000569063 SPATA33Q96N06 139 aa23.32■■□□□ 1.32
CLK3-225ENST00000569063 ZSWIM6Q9HCJ5 1215 aa23.32■■□□□ 1.32
CLK3-225ENST00000569063 NAP1L2Q9ULW6 460 aaPredicted RBP23.32■■□□□ 1.32
CLK3-225ENST00000569063 EVCP57679 992 aa23.31■■□□□ 1.32
CLK3-225ENST00000569063 SEMA3FQ13275 785 aa23.31■■□□□ 1.32
CLK3-225ENST00000569063 UBE2SQ16763 222 aa23.31■■□□□ 1.32
CLK3-225ENST00000569063 TMEM240Q5SV17 173 aa23.31■■□□□ 1.32
CLK3-225ENST00000569063 PPP1R18Q6NYC8 613 aa23.31■■□□□ 1.32
CLK3-225ENST00000569063 RUFY3Q7L099 469 aa23.31■■□□□ 1.32
CLK3-225ENST00000569063 PPP1R13LQ8WUF5 828 aa23.31■■□□□ 1.32
CLK3-225ENST00000569063 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.31■■□□□ 1.322e-8■■■□□ 18
CLK3-225ENST00000569063 KATNAL1Q9BW62 490 aa23.31■■□□□ 1.32
CLK3-225ENST00000569063 WNT8AQ9H1J5 351 aa23.31■■□□□ 1.32
CLK3-225ENST00000569063 MLXIPQ9HAP2 919 aa23.31■■□□□ 1.32
CLK3-225ENST00000569063 IL23AQ9NPF7 189 aa23.31■■□□□ 1.32
CLK3-225ENST00000569063 STXBP3O00186 592 aa23.3■■□□□ 1.32
CLK3-225ENST00000569063 F2P00734 622 aa23.3■■□□□ 1.32
CLK3-225ENST00000569063 CYP2C9P11712 490 aa23.3■■□□□ 1.32
CLK3-225ENST00000569063 NAPAP54920 295 aa23.3■■□□□ 1.32
CLK3-225ENST00000569063 SMAD3P84022 425 aaKnown RBP23.3■■□□□ 1.32
CLK3-225ENST00000569063 NEDD9Q14511 834 aa23.3■■□□□ 1.32
CLK3-225ENST00000569063 FAM109BQ6ICB4 259 aaPredicted RBP23.3■■□□□ 1.32
CLK3-225ENST00000569063 TYW1BQ6NUM6 668 aa23.3■■□□□ 1.32
CLK3-225ENST00000569063 DEFB123Q8N688 67 aa23.3■■□□□ 1.32
CLK3-225ENST00000569063 RIC8AQ9NPQ8 531 aa23.3■■□□□ 1.32
CLK3-225ENST00000569063 BARHL2Q9NY43 387 aa23.3■■□□□ 1.32
CLK3-225ENST00000569063 PCDHA6Q9UN73 950 aa23.3■■□□□ 1.32
CLK3-225ENST00000569063 PCDHA8Q9Y5H6 950 aa23.3■■□□□ 1.32
CLK3-225ENST00000569063 SPDYE3A6NKU9 549 aa23.29■■□□□ 1.32
CLK3-225ENST00000569063 HAS3O00219 553 aa23.29■■□□□ 1.32
CLK3-225ENST00000569063 PSEN2P49810 448 aa23.29■■□□□ 1.32
CLK3-225ENST00000569063 CCL23P55773 120 aa23.29■■□□□ 1.32
CLK3-225ENST00000569063 CHMP4BP1P59074 171 aa23.29■■□□□ 1.32
CLK3-225ENST00000569063 PSRC1Q6PGN9 363 aaPredicted RBP23.29■■□□□ 1.32
CLK3-225ENST00000569063 METTL7BQ6UX53 244 aa23.29■■□□□ 1.32
CLK3-225ENST00000569063 NLRX1Q86UT6 975 aa23.29■■□□□ 1.32
CLK3-225ENST00000569063 SENP7Q9BQF6 1050 aa23.29■■□□□ 1.32
CLK3-225ENST00000569063 TM6SF1Q9BZW5 370 aa23.29■■□□□ 1.32
CLK3-225ENST00000569063 BCAS3Q9H6U6 928 aa23.29■■□□□ 1.32
CLK3-225ENST00000569063 MYH7BA7E2Y1 1941 aa23.29■■□□□ 1.32
CLK3-225ENST00000569063 SORBS3O60504 671 aa23.28■■□□□ 1.32
CLK3-225ENST00000569063 ZNF286BP0CG31 522 aa23.28■■□□□ 1.32
CLK3-225ENST00000569063 ACRP10323 421 aa23.28■■□□□ 1.32
CLK3-225ENST00000569063 MFSD10Q14728 455 aa23.28■■□□□ 1.32
CLK3-225ENST00000569063 PFKFB3Q16875 520 aaPredicted RBP23.28■■□□□ 1.32
CLK3-225ENST00000569063 RASIP1Q5U651 963 aa23.28■■□□□ 1.32
CLK3-225ENST00000569063 ZNF365Q70YC5 407 aa23.28■■□□□ 1.32
CLK3-225ENST00000569063 Q7L0L9 218 aa23.28■■□□□ 1.32
CLK3-225ENST00000569063 GPRASP2Q96D09 838 aa23.28■■□□□ 1.32
CLK3-225ENST00000569063 C16orf70Q9BSU1 422 aa23.28■■□□□ 1.32
CLK3-225ENST00000569063 CYP46A1Q9Y6A2 500 aa23.28■■□□□ 1.32
CLK3-225ENST00000569063 PITPNM1O00562 1244 aa23.27■■□□□ 1.32
CLK3-225ENST00000569063 ADCY7P51828 1080 aa23.27■■□□□ 1.32
CLK3-225ENST00000569063 PTGISQ16647 500 aa23.27■■□□□ 1.32
CLK3-225ENST00000569063 KIAA0753Q2KHM9 967 aa23.27■■□□□ 1.32
CLK3-225ENST00000569063 GDF6Q6KF10 455 aaPredicted RBP23.27■■□□□ 1.32
CLK3-225ENST00000569063 C7orf31Q8N865 590 aa23.27■■□□□ 1.32
CLK3-225ENST00000569063 CDHR1Q96JP9 859 aa23.27■■□□□ 1.32
CLK3-225ENST00000569063 CTAGE1Q96RT6 745 aa23.27■■□□□ 1.32
CLK3-225ENST00000569063 GLT8D2Q9H1C3 349 aa23.27■■□□□ 1.32
CLK3-225ENST00000569063 EHMT1Q9H9B1 1298 aa23.27■■□□□ 1.32
CLK3-225ENST00000569063 GTF2IRD1Q9UHL9 959 aa23.27■■□□□ 1.32
CLK3-225ENST00000569063 SMCO2A6NFE2 343 aa23.26■■□□□ 1.31
CLK3-225ENST00000569063 FOSP01100 380 aaPredicted RBP23.26■■□□□ 1.31
CLK3-225ENST00000569063 ITGB5P18084 799 aa23.26■■□□□ 1.31
CLK3-225ENST00000569063 PDIA3P30101 505 aaKnown RBP23.26■■□□□ 1.31
CLK3-225ENST00000569063 BFSP2Q13515 415 aa23.26■■□□□ 1.31
CLK3-225ENST00000569063 TOB2Q14106 344 aaPredicted RBP23.26■■□□□ 1.31
CLK3-225ENST00000569063 CYFIP1Q7L576 1253 aa23.26■■□□□ 1.31
CLK3-225ENST00000569063 RPUSD2Q8IZ73 545 aaKnown RBP23.26■■□□□ 1.31
CLK3-225ENST00000569063 GIMAP8Q8ND71 665 aaPredicted RBP23.26■■□□□ 1.31
CLK3-225ENST00000569063 ALG1Q9BT22 464 aa23.26■■□□□ 1.31
CLK3-225ENST00000569063 MTMR10Q9NXD2 777 aa23.26■■□□□ 1.31
CLK3-225ENST00000569063 HDAC6Q9UBN7 1215 aa23.26■■□□□ 1.31
CLK3-225ENST00000569063 NOD1Q9Y239 953 aa23.26■■□□□ 1.31
CLK3-225ENST00000569063 UBIAD1Q9Y5Z9 338 aa23.26■■□□□ 1.31
CLK3-225ENST00000569063 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.25■■□□□ 1.31
CLK3-225ENST00000569063 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.25■■□□□ 1.31
CLK3-225ENST00000569063 NOP56O00567 594 aaKnown RBP23.25■■□□□ 1.31
CLK3-225ENST00000569063 PRPF3O43395 683 aaKnown RBP23.25■■□□□ 1.31
CLK3-225ENST00000569063 FGBP02675 491 aa23.25■■□□□ 1.31
CLK3-225ENST00000569063 SCG2P13521 617 aa23.25■■□□□ 1.31
CLK3-225ENST00000569063 NTRK3Q16288 839 aa23.25■■□□□ 1.31
CLK3-225ENST00000569063 HERVK_113Q902F9 699 aa23.25■■□□□ 1.31
CLK3-225ENST00000569063 VWCEQ96DN2 955 aa23.25■■□□□ 1.31
CLK3-225ENST00000569063 SCLYQ96I15 445 aa23.25■■□□□ 1.31
CLK3-225ENST00000569063 GPR20Q99678 358 aa23.25■■□□□ 1.31
CLK3-225ENST00000569063 MAFGO15525 162 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms