RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 PLA2G4BP0C869 781 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 PNMA6AP0CW24 399 aaPredicted RBP6.94□□□□□ -1.3
CLN3-223ENST00000566472 BMP3P12645 472 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 IDEP14735 1019 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 ZSCAN20P17040 1043 aaPredicted RBP6.94□□□□□ -1.3
CLN3-223ENST00000566472 MUTP22033 750 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 MCM3P25205 808 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 SLC16A2P36021 539 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 ARHGAP4P98171 946 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 ATP2B2Q01814 1243 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 RBM26Q5T8P6 1007 aaKnown RBP6.94□□□□□ -1.3
CLN3-223ENST00000566472 PAPD7Q5XG87 772 aaKnown RBP6.94□□□□□ -1.3
CLN3-223ENST00000566472 IQCEQ6IPM2 695 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 CC2D1AQ6P1N0 951 aaPredicted RBP6.94□□□□□ -1.3
CLN3-223ENST00000566472 SH3BP5LQ7L8J4 393 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 TRAPPC11Q7Z392 1133 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 KCNK18Q7Z418 384 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 KIAA1328Q86T90 577 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 FBXO11Q86XK2 927 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 KIAA0825Q8IV33 1275 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 C7orf43Q8WVR3 580 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 RUBCNQ92622 972 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 SYN2Q92777 582 aaPredicted RBP6.94□□□□□ -1.3
CLN3-223ENST00000566472 PCMTD1Q96MG8 357 aaPredicted RBP6.94□□□□□ -1.3
CLN3-223ENST00000566472 CHP1Q99653 195 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 ARID3AQ99856 593 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 NUDT12Q9BQG2 462 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 NHEJ1Q9H9Q4 299 aaPredicted RBP6.94□□□□□ -1.3
CLN3-223ENST00000566472 DBNDD1Q9H9R9 158 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 ARFGAP3Q9NP61 516 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 PANK4Q9NVE7 773 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 TMOD2Q9NZR1 351 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 FAM184BQ9ULE4 1060 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 MYO6Q9UM54 1294 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 PLAGL2Q9UPG8 496 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 COL4A3BPQ9Y5P4 624 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 FHOD1Q9Y613 1164 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 ADAMTSL1Q8N6G6 1762 aa6.94□□□□□ -1.3
CLN3-223ENST00000566472 MYH8P13535 1937 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 SPDYE3A6NKU9 549 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 F5H6K3 240 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 MEIS2O14770 477 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 PLA2G6O60733 806 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 NDUFB10O96000 172 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 CYP11B2P19099 503 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 RPA1P27694 616 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 KLRC3Q07444 240 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 KIF5AQ12840 1032 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 MAPK8IP2Q13387 824 aaPredicted RBP6.93□□□□□ -1.3
CLN3-223ENST00000566472 SPA17Q15506 151 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 CCDC122Q5T0U0 273 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 FKBP1CQ5VVH2 108 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 PDXDC1Q6P996 788 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 DYMQ7RTS9 669 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 GPBP1Q86WP2 473 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 SIAH1Q8IUQ4 282 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 ZFPM1Q8IX07 1006 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 CCDC155Q8N6L0 562 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 NEK11Q8NG66 645 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 ETNPPLQ8TBG4 499 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 CCDC42Q96M95 316 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 POLR3CQ9BUI4 534 aaPredicted RBP6.93□□□□□ -1.3
CLN3-223ENST00000566472 PARD6BQ9BYG5 372 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 IRX2Q9BZI1 471 aaPredicted RBP6.93□□□□□ -1.3
CLN3-223ENST00000566472 UBXN6Q9BZV1 441 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 VPS33BQ9H267 617 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 EHMT1Q9H9B1 1298 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 ARHGEF10LQ9HCE6 1279 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 LUC7LQ9NQ29 371 aaKnown RBP6.93□□□□□ -1.3
CLN3-223ENST00000566472 CEP72Q9P209 647 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 PCDHA2Q9Y5H9 948 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 ATP8B3O60423 1300 aa6.93□□□□□ -1.3
CLN3-223ENST00000566472 TNS1Q9HBL0 1735 aaKnown RBP6.93□□□□□ -1.3
CLN3-223ENST00000566472 ARFGEF1Q9Y6D6 1849 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 A0A0U1RQJ8 604 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 TARSL2A2RTX5 802 aaKnown RBP6.92□□□□□ -1.3
CLN3-223ENST00000566472 USP17L15C9J2P7 530 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 USP17L13C9JLJ4 530 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 USP17L11C9JVI0 530 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 USP17L18D6R9N7 530 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 USP17L22D6RA61 530 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 USP17L17D6RBQ6 530 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 USP17L19D6RCP7 530 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 USP17L20D6RJB6 530 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 RBAK-RBAKDNI3L0D1 243 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 PJA2O43164 708 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 TACC1O75410 805 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 TBC1D8O95759 1140 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 PRLRP16471 622 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 GAP43P17677 238 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 ANXA13P27216 316 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 PLA2G4AP47712 749 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 RBM5P52756 815 aaKnown RBP eCLIP6.92□□□□□ -1.3
CLN3-223ENST00000566472 SLC12A3P55017 1021 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 ITIH3Q06033 890 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 SPIRE1Q08AE8 756 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 USP17L24Q0WX57 530 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 TCP10Q12799 353 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 ECM1Q16610 540 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 BMT2Q1RMZ1 405 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms