RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 TSPYL2Q9H2G4 693 aaPredicted RBP17.22■□□□□ 0.35
CLN3-222ENST00000566083 HDAC6Q9UBN7 1215 aa17.22■□□□□ 0.35
CLN3-222ENST00000566083 NCOR1O75376 2440 aa17.22■□□□□ 0.35
CLN3-222ENST00000566083 CDH23Q9H251 3354 aa17.22■□□□□ 0.35
CLN3-222ENST00000566083 CCDC69A6NI79 296 aa17.21■□□□□ 0.35
CLN3-222ENST00000566083 GGPS1O95749 300 aa17.21■□□□□ 0.35
CLN3-222ENST00000566083 ANTXR2P58335 489 aa17.21■□□□□ 0.35
CLN3-222ENST00000566083 IRX6P78412 446 aaPredicted RBP17.21■□□□□ 0.35
CLN3-222ENST00000566083 NFXL1Q6ZNB6 911 aa17.21■□□□□ 0.35
CLN3-222ENST00000566083 LRRC8DQ7L1W4 858 aa17.21■□□□□ 0.35
CLN3-222ENST00000566083 ZNF654Q8IZM8 581 aa17.21■□□□□ 0.35
CLN3-222ENST00000566083 ATXN2LQ8WWM7 1075 aaKnown RBP17.21■□□□□ 0.35
CLN3-222ENST00000566083 UNC80Q8N2C7 3258 aa17.21■□□□□ 0.35
CLN3-222ENST00000566083 TRIP12Q14669 1992 aaPredicted RBP17.21■□□□□ 0.35
CLN3-222ENST00000566083 NOP56O00567 594 aaKnown RBP17.21■□□□□ 0.34
CLN3-222ENST00000566083 PRC1O43663 620 aa17.21■□□□□ 0.34
CLN3-222ENST00000566083 IGFBP4P22692 258 aa17.21■□□□□ 0.34
CLN3-222ENST00000566083 ICAM3P32942 547 aa17.21■□□□□ 0.34
CLN3-222ENST00000566083 LIFRP42702 1097 aa17.21■□□□□ 0.34
CLN3-222ENST00000566083 RABGGTBP53611 331 aa17.21■□□□□ 0.34
CLN3-222ENST00000566083 SLC35G1Q2M3R5 365 aa17.21■□□□□ 0.34
CLN3-222ENST00000566083 TJAP1Q5JTD0 557 aa17.21■□□□□ 0.34
CLN3-222ENST00000566083 RNF20Q5VTR2 975 aa17.21■□□□□ 0.34
CLN3-222ENST00000566083 SMARCC2Q8TAQ2 1214 aa17.21■□□□□ 0.34
CLN3-222ENST00000566083 INPP4AQ96PE3 977 aaPredicted RBP17.21■□□□□ 0.34
CLN3-222ENST00000566083 ALG1Q9BT22 464 aa17.21■□□□□ 0.34
CLN3-222ENST00000566083 USP26Q9BXU7 913 aa17.21■□□□□ 0.34
CLN3-222ENST00000566083 LY9Q9HBG7 655 aa17.21■□□□□ 0.34
CLN3-222ENST00000566083 SENP2Q9HC62 589 aa17.21■□□□□ 0.34
CLN3-222ENST00000566083 MYH7BA7E2Y1 1941 aa17.2■□□□□ 0.34
CLN3-222ENST00000566083 FRMPD4Q14CM0 1322 aa17.2■□□□□ 0.34
CLN3-222ENST00000566083 PIK3CDO00329 1044 aa17.2■□□□□ 0.34
CLN3-222ENST00000566083 CKBP12277 381 aa17.2■□□□□ 0.34
CLN3-222ENST00000566083 UBA1P22314 1058 aaKnown RBP17.2■□□□□ 0.34
CLN3-222ENST00000566083 HSDL1Q3SXM5 330 aa17.2■□□□□ 0.34
CLN3-222ENST00000566083 CNKSR3Q6P9H4 555 aa17.2■□□□□ 0.34
CLN3-222ENST00000566083 GIMAP8Q8ND71 665 aaPredicted RBP17.2■□□□□ 0.34
CLN3-222ENST00000566083 EMSYQ7Z589 1322 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 ABHD14A-ACY1A0A1B0GW23 586 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 H3BRB1 525 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 FIBPO43427 364 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 GTPBP6O43824 516 aaPredicted RBP17.19■□□□□ 0.34
CLN3-222ENST00000566083 CXCL10P02778 98 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 ZNF286BP0CG31 522 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 METTL7BQ6UX53 244 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 HERC6Q8IVU3 1022 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 TEX2Q8IWB9 1127 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 IL31RAQ8NI17 732 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 PPP1R13LQ8WUF5 828 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 CDHR1Q96JP9 859 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 CTAGE1Q96RT6 745 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 SENP7Q9BQF6 1050 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 ESYT1Q9BSJ8 1104 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 TANC1Q9C0D5 1861 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 LSG1Q9H089 658 aaKnown RBP17.19■□□□□ 0.34
CLN3-222ENST00000566083 TUT1Q9H6E5 874 aaKnown RBP17.19■□□□□ 0.34
CLN3-222ENST00000566083 TAF6LQ9Y6J9 622 aa17.19■□□□□ 0.34
CLN3-222ENST00000566083 TET1Q8NFU7 2136 aa17.18■□□□□ 0.34
CLN3-222ENST00000566083 SCN5AQ14524 2016 aa17.18■□□□□ 0.34
CLN3-222ENST00000566083 SPATA31C2B4DYI2 1134 aa17.18■□□□□ 0.34
CLN3-222ENST00000566083 CA3P07451 260 aa17.18■□□□□ 0.34
CLN3-222ENST00000566083 GNAT1P11488 350 aa17.18■□□□□ 0.34
CLN3-222ENST00000566083 POU3F3P20264 500 aaPredicted RBP17.18■□□□□ 0.34
CLN3-222ENST00000566083 IKBKEQ14164 716 aa17.18■□□□□ 0.34
CLN3-222ENST00000566083 BMP2KLQ5H9B9 411 aa17.18■□□□□ 0.34
CLN3-222ENST00000566083 PCNX4Q63HM2 1172 aa17.18■□□□□ 0.34
CLN3-222ENST00000566083 SYNE3Q6ZMZ3 975 aa17.18■□□□□ 0.34
CLN3-222ENST00000566083 NLRX1Q86UT6 975 aa17.18■□□□□ 0.34
CLN3-222ENST00000566083 C16orf70Q9BSU1 422 aa17.18■□□□□ 0.34
CLN3-222ENST00000566083 THEGQ9P2T0 379 aa17.18■□□□□ 0.34
CLN3-222ENST00000566083 SLC12A7Q9Y666 1083 aa17.18■□□□□ 0.34
CLN3-222ENST00000566083 SH2B2O14492 632 aaPredicted RBP17.17■□□□□ 0.34
CLN3-222ENST00000566083 SLC27A2O14975 620 aa17.17■□□□□ 0.34
CLN3-222ENST00000566083 CAND2O75155 1236 aa17.17■□□□□ 0.34
CLN3-222ENST00000566083 SP2Q02086 613 aa17.17■□□□□ 0.34
CLN3-222ENST00000566083 ADGRE1Q14246 886 aa17.17■□□□□ 0.34
CLN3-222ENST00000566083 USP38Q8NB14 1042 aa17.17■□□□□ 0.34
CLN3-222ENST00000566083 PIBF1Q8WXW3 757 aa17.17■□□□□ 0.34
CLN3-222ENST00000566083 PPM1EQ8WY54 764 aa17.17■□□□□ 0.34
CLN3-222ENST00000566083 DHX38Q92620 1227 aaKnown RBP17.17■□□□□ 0.34
CLN3-222ENST00000566083 ZBED2Q9BTP6 218 aa17.17■□□□□ 0.34
CLN3-222ENST00000566083 ANO2Q9NQ90 1003 aa17.17■□□□□ 0.34
CLN3-222ENST00000566083 ZNF215Q9UL58 517 aaPredicted RBP17.17■□□□□ 0.34
CLN3-222ENST00000566083 GBF1Q92538 1859 aa17.16■□□□□ 0.34
CLN3-222ENST00000566083 C17orf102A2RUQ5 167 aa17.16■□□□□ 0.34
CLN3-222ENST00000566083 TLL1O43897 1013 aa17.16■□□□□ 0.34
CLN3-222ENST00000566083 MYOGP15173 224 aa17.16■□□□□ 0.34
CLN3-222ENST00000566083 MRPS5P82675 430 aaKnown RBP17.16■□□□□ 0.34
CLN3-222ENST00000566083 MRPS9P82933 396 aaKnown RBP17.16■□□□□ 0.34
CLN3-222ENST00000566083 NECTIN1Q15223 517 aa17.16■□□□□ 0.34
CLN3-222ENST00000566083 CREB3L3Q68CJ9 461 aa17.16■□□□□ 0.34
CLN3-222ENST00000566083 SERINC5Q86VE9 423 aa17.16■□□□□ 0.34
CLN3-222ENST00000566083 PSTPIP2Q9H939 334 aa17.16■□□□□ 0.34
CLN3-222ENST00000566083 MEIS2O14770 477 aa17.15■□□□□ 0.34
CLN3-222ENST00000566083 MAFGO15525 162 aa17.15■□□□□ 0.34
CLN3-222ENST00000566083 LGALS2P05162 132 aa17.15■□□□□ 0.34
CLN3-222ENST00000566083 WDR5P61964 334 aaKnown RBP17.15■□□□□ 0.34
CLN3-222ENST00000566083 AAK1Q2M2I8 961 aa17.15■□□□□ 0.34
CLN3-222ENST00000566083 CENPQQ7L2Z9 268 aaPredicted RBP17.15■□□□□ 0.34
CLN3-222ENST00000566083 SGMS1Q86VZ5 419 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms