RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 SETQ01105 290 aaPredicted RBP23.89■■□□□ 1.41
CLN3-209ENST00000561689 CST9Q5W186 159 aa23.89■■□□□ 1.41
CLN3-209ENST00000561689 TRIML1Q8N9V2 468 aa23.89■■□□□ 1.41
CLN3-209ENST00000561689 ZNF577Q9BSK1 485 aa23.89■■□□□ 1.41
CLN3-209ENST00000561689 WDR11Q9BZH6 1224 aa23.89■■□□□ 1.41
CLN3-209ENST00000561689 SPATC1LQ9H0A9 340 aa23.89■■□□□ 1.41
CLN3-209ENST00000561689 BLOC1S4Q9NUP1 217 aa23.89■■□□□ 1.41
CLN3-209ENST00000561689 OSBPP22059 807 aa23.88■■□□□ 1.41
CLN3-209ENST00000561689 PABPC4Q13310 644 aaKnown RBP eCLIP23.88■■□□□ 1.413e-6■■■■□ 26.6
CLN3-209ENST00000561689 TMEM119Q4V9L6 283 aa23.88■■□□□ 1.41
CLN3-209ENST00000561689 LRCH2Q5VUJ6 765 aa23.88■■□□□ 1.41
CLN3-209ENST00000561689 KCNK18Q7Z418 384 aa23.88■■□□□ 1.41
CLN3-209ENST00000561689 SLC5A5Q92911 643 aa23.88■■□□□ 1.41
CLN3-209ENST00000561689 GOLGA6L19H0YKK7 550 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 AP5Z1O43299 807 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 CNMDO75829 334 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 ITGBL1O95965 494 aaPredicted RBP23.87■■□□□ 1.41
CLN3-209ENST00000561689 RIOX2Q8IUF8 465 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 CHST13Q8NET6 341 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 BPIFA3Q9BQP9 254 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 MAGEF1Q9HAY2 307 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 TXNRD2Q9NNW7 524 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 PSMD10O75832 226 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 MCM6Q14566 821 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 MS4A4AQ96JQ5 239 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 KCNH7Q9NS40 1196 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 PKD2L1Q9P0L9 805 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 STK17AQ9UEE5 414 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 UBIAD1Q9Y5Z9 338 aa23.87■■□□□ 1.41
CLN3-209ENST00000561689 POTEB3A0JP26 581 aa23.86■■□□□ 1.41
CLN3-209ENST00000561689 EML1O00423 815 aa23.86■■□□□ 1.41
CLN3-209ENST00000561689 GAS7O60861 476 aa23.86■■□□□ 1.41
CLN3-209ENST00000561689 MED24O75448 989 aa23.86■■□□□ 1.41
CLN3-209ENST00000561689 RPN1P04843 607 aaKnown RBP23.86■■□□□ 1.41
CLN3-209ENST00000561689 CHADLQ6NUI6 762 aa23.86■■□□□ 1.41
CLN3-209ENST00000561689 POTEBQ6S5H4 581 aa23.86■■□□□ 1.41
CLN3-209ENST00000561689 OTOP1Q7RTM1 612 aa23.86■■□□□ 1.41
CLN3-209ENST00000561689 NCAPG2Q86XI2 1143 aa23.86■■□□□ 1.41
CLN3-209ENST00000561689 RBPJLQ9UBG7 517 aa23.86■■□□□ 1.41
CLN3-209ENST00000561689 KIAA1024Q9UPX6 916 aa23.86■■□□□ 1.41
CLN3-209ENST00000561689 IPO5O00410 1097 aaKnown RBP23.85■■□□□ 1.41
CLN3-209ENST00000561689 CHMP2AO43633 222 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 HYIQ5T013 277 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 ANKRD35Q8N283 1001 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 ERMNQ8TAM6 284 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 LARP4BQ92615 738 aaKnown RBP23.85■■□□□ 1.41
CLN3-209ENST00000561689 RAD54LQ92698 747 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 MOV10L1Q9BXT6 1211 aaKnown RBP23.85■■□□□ 1.41
CLN3-209ENST00000561689 KDM3AQ9Y4C1 1321 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 CYP2C8P10632 490 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 CCDC173Q0VFZ6 552 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 HAUS3Q68CZ6 603 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 SV2BQ7L1I2 683 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 CATSPER3Q86XQ3 398 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 SMYD4Q8IYR2 804 aaPredicted RBP23.85■■□□□ 1.41
CLN3-209ENST00000561689 MLKLQ8NB16 471 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 NSUN6Q8TEA1 469 aaKnown RBP23.85■■□□□ 1.41
CLN3-209ENST00000561689 R3HDMLQ9H3Y0 253 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 JADE2Q9NQC1 790 aa23.85■■□□□ 1.41
CLN3-209ENST00000561689 MYL1P05976 194 aa23.84■■□□□ 1.41
CLN3-209ENST00000561689 NR3C2P08235 984 aa23.84■■□□□ 1.41
CLN3-209ENST00000561689 BCRP11274 1271 aa23.84■■□□□ 1.41
CLN3-209ENST00000561689 CETPP11597 493 aa23.84■■□□□ 1.41
CLN3-209ENST00000561689 GTF2A2P52657 109 aa23.84■■□□□ 1.41
CLN3-209ENST00000561689 MTMR1Q13613 665 aa23.84■■□□□ 1.41
CLN3-209ENST00000561689 Q3C1V9 767 aa23.84■■□□□ 1.41
CLN3-209ENST00000561689 NIPA1Q7RTP0 329 aa23.84■■□□□ 1.41
CLN3-209ENST00000561689 TRIM9Q9C026 710 aa23.84■■□□□ 1.41
CLN3-209ENST00000561689 NT5C3AQ9H0P0 336 aa23.84■■□□□ 1.41
CLN3-209ENST00000561689 CCL15-CCL14A0A0B4J2E2 113 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 POTEFA5A3E0 1075 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 CCL15Q16663 113 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 POTEGQ6S5H5 508 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 VSIG10LQ86VR7 867 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 FBXO40Q9UH90 709 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 RBBP6Q7Z6E9 1792 aaKnown RBP23.83■■□□□ 1.41
CLN3-209ENST00000561689 TESPA1A2RU30 521 aaPredicted RBP23.83■■□□□ 1.41
CLN3-209ENST00000561689 E9PMD0 336 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 ADCY5O95622 1261 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 SPATA31C1P0DKV0 1188 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 ERCC3P19447 782 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 CCND2P30279 289 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 AMPD3Q01432 767 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 CYP4A11Q02928 519 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 PPP2R5CQ13362 524 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 BRI3BPQ8WY22 251 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 PPP1R9BQ96SB3 815 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 C7orf25Q9BPX7 421 aa23.83■■□□□ 1.41
CLN3-209ENST00000561689 AGO4Q9HCK5 861 aaKnown RBP23.83■■□□□ 1.41
CLN3-209ENST00000561689 DDX39AO00148 427 aaKnown RBP23.82■■□□□ 1.4
CLN3-209ENST00000561689 PDHXO00330 501 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 KLRC4O43908 158 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 RPA1P27694 616 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 CNTN2Q02246 1040 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 NCAPHQ15003 741 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 SPRYD7Q5W111 196 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 EIF2AK1Q9BQI3 630 aaKnown RBP23.82■■□□□ 1.4
CLN3-209ENST00000561689 TEKT3Q9BXF9 490 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 UNC45AQ9H3U1 944 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 RMND1Q9NWS8 449 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms