RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 EIF4E1BA6NMX2 242 aaKnown RBP7.77□□□□□ -1.17
USP3-210ENST00000559192 KRT14P02533 472 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 USP17L8P0C7I0 530 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 IRAK1P51617 712 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 PARP10Q53GL7 1025 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 OTUD6AQ7L8S5 288 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 KCND1Q9NSA2 647 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 ADAMTS1Q9UHI8 967 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 L1RE1Q9UN81 338 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 FAF1Q9UNN5 650 aaPredicted RBP7.77□□□□□ -1.17
USP3-210ENST00000559192 ZBTB1Q9Y2K1 713 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 USH1CQ9Y6N9 552 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 PSMD14O00487 310 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 GUCY2CP25092 1073 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 TOB1P50616 345 aaPredicted RBP7.77□□□□□ -1.17
USP3-210ENST00000559192 MRPL12P52815 198 aaKnown RBP7.77□□□□□ -1.17
USP3-210ENST00000559192 HAUS3Q68CZ6 603 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 CAPN12Q6ZSI9 719 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 GDAP1Q8TB36 358 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 ZNF473Q8WTR7 871 aaKnown RBP7.77□□□□□ -1.17
USP3-210ENST00000559192 LZTS2Q9BRK4 669 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 ACTR5Q9H9F9 607 aaPredicted RBP7.77□□□□□ -1.17
USP3-210ENST00000559192 CCDC87Q9NVE4 849 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 HAUS2Q9NVX0 235 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 KIAA1024Q9UPX6 916 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 DNM3Q9UQ16 869 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 COL4A3BPQ9Y5P4 624 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 COL15A1P39059 1388 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 ECM2O94769 699 aaPredicted RBP7.77□□□□□ -1.17
USP3-210ENST00000559192 STMN1P16949 149 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 PDE6BP35913 854 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 SLC1A4P43007 532 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 ANKRD40Q6AI12 368 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 CUEDC2Q9H467 287 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 EHMT1Q9H9B1 1298 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 EPB41L4AQ9HCS5 686 aaPredicted RBP7.77□□□□□ -1.17
USP3-210ENST00000559192 KLC4Q9NSK0 619 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 ARMCX3Q9UH62 379 aaPredicted RBP7.77□□□□□ -1.17
USP3-210ENST00000559192 SNX12Q9UMY4 172 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 DUSP10Q9Y6W6 482 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 CDHR2Q9BYE9 1310 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 HNRNPH1P31943 449 aaKnown RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 MAGOHP61326 146 aaKnown RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 ATP2C1P98194 919 aaPredicted RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 HDLBPQ00341 1268 aaKnown RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 BIRC2Q13490 618 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 EXOC3L4Q17RC7 722 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 RNF10Q8N5U6 811 aaKnown RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 OR2W6PQ8NHA6 318 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 DDX12PQ92771 950 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 MAGOHBQ96A72 148 aaKnown RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 ATP6V1G3Q96LB4 118 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 MAGEF1Q9HAY2 307 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 CD248Q9HCU0 757 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 RBM12Q9NTZ6 932 aaKnown RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 PTPRUQ92729 1446 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 SALL1Q9NSC2 1324 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 DDX39AO00148 427 aaKnown RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 TXNDC9O14530 226 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 H2AFZP0C0S5 128 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 STAT1P42224 750 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 MAP7D1Q3KQU3 841 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 H2AFVQ71UI9 128 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 FOXP4Q8IVH2 680 aaPredicted RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 PARP9Q8IXQ6 854 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 GSDMBQ8TAX9 411 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 PIGSQ96S52 555 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 LAD1O00515 517 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 NR2F2P24468 414 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 EZH2Q15910 746 aaKnown RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 ARL6IP4Q66PJ3 421 aaKnown RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 CCDC13Q8IYE1 715 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 PHF20Q9BVI0 1012 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.76□□□□□ -1.171e-7■□□□□ 10.9
USP3-210ENST00000559192 PCDHA12Q9UN75 941 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 GFPT2O94808 682 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 ALDH3A1P30838 453 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 RFC4P35249 363 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 TBX2Q13207 712 aaPredicted RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 PFKFB3Q16875 520 aaPredicted RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 PRR16Q569H4 304 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 RASIP1Q5U651 963 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 TRAPPC11Q7Z392 1133 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 ABTB1Q969K4 478 aaPredicted RBP7.76□□□□□ -1.17
USP3-210ENST00000559192 HVCN1Q96D96 273 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 FAM212AQ96EL1 285 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 ZIM3Q96PE6 472 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 EPN3Q9H201 632 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 ZC4H2Q9NQZ6 224 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 USTQ9Y2C2 406 aa7.76□□□□□ -1.17
USP3-210ENST00000559192 LRRD1A4D1F6 860 aa7.75□□□□□ -1.17
USP3-210ENST00000559192 PLEKP08567 350 aaPredicted RBP7.75□□□□□ -1.17
USP3-210ENST00000559192 SEC24CP53992 1094 aa7.75□□□□□ -1.17
USP3-210ENST00000559192 HERVK_113P62684 666 aa7.75□□□□□ -1.17
USP3-210ENST00000559192 PHLDB2Q86SQ0 1253 aa7.75□□□□□ -1.17
USP3-210ENST00000559192 COA7Q96BR5 231 aa7.75□□□□□ -1.17
USP3-210ENST00000559192 AK8Q96MA6 479 aa7.75□□□□□ -1.17
USP3-210ENST00000559192 ELAC2Q9BQ52 826 aaKnown RBP7.75□□□□□ -1.17
USP3-210ENST00000559192 INTS13Q9NVM9 706 aa7.75□□□□□ -1.17
USP3-210ENST00000559192 HDAC9Q9UKV0 1011 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms