RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PLA2G4BP0C869 781 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 DNM2P50570 870 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 COASYQ13057 564 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 GPBP1Q86WP2 473 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 CATSPER3Q86XQ3 398 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 TMTC1Q8IUR5 882 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 GMCL1P1Q8NEA9 526 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 OR8K1Q8NGG5 319 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 ZBTB9Q96C00 473 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 GMCL1Q96IK5 515 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 KCNMB3Q9NPA1 279 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 ARFGEF1Q9Y6D6 1849 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 GOLGA6L9A6NEM1 432 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 ZBTB7AO95365 584 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 EGFRP00533 1210 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 KRT18P05783 430 aaKnown RBP11.82□□□□□ -0.52
CUX1-217ENST00000558836 ZNF76P36508 570 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 STAT2P52630 851 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 HERC4Q5GLZ8 1057 aaPredicted RBP11.82□□□□□ -0.52
CUX1-217ENST00000558836 GUCA1BQ9UMX6 200 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 REXO2Q9Y3B8 237 aaKnown RBP11.82□□□□□ -0.52
CUX1-217ENST00000558836 CHMP2AO43633 222 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 PLEKP08567 350 aaPredicted RBP11.82□□□□□ -0.52
CUX1-217ENST00000558836 GCFC2P16383 781 aaKnown RBP11.82□□□□□ -0.52
CUX1-217ENST00000558836 USP11P51784 963 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 SLC35F6Q8N357 371 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 UBXN4Q92575 508 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 LENG9Q96B70 501 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 TANGO6Q9C0B7 1094 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 RGL1Q9NZL6 768 aa11.82□□□□□ -0.52
CUX1-217ENST00000558836 PUF60Q9UHX1 559 aaKnown RBP11.82□□□□□ -0.52
CUX1-217ENST00000558836 EPN1Q9Y6I3 576 aaPredicted RBP11.82□□□□□ -0.52
CUX1-217ENST00000558836 ATRNL1Q5VV63 1379 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 PVALEFA0A1B0GWK0 134 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 KIF5CO60282 957 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 VIL1P09327 827 aaKnown RBP11.81□□□□□ -0.52
CUX1-217ENST00000558836 MAP3K9P80192 1104 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 CYP27A1Q02318 531 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 ETNPPLQ8TBG4 499 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 CCDC51Q96ER9 411 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 GMLQ99445 158 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 MMRN2Q9H8L6 949 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 ZBTB21Q9ULJ3 1066 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 CAPN11Q9UMQ6 739 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 CNTNAP1P78357 1384 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 TNS1Q9HBL0 1735 aaKnown RBP11.81□□□□□ -0.52
CUX1-217ENST00000558836 TRAF5O00463 557 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 ZBTB39O15060 712 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 MSH4O15457 936 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 NPM3O75607 178 aaKnown RBP11.81□□□□□ -0.52
CUX1-217ENST00000558836 NDUFA10O95299 355 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 APBA1Q02410 837 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 ARSHQ5FYA8 562 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 TEX35Q5T0J7 233 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 CRYGNQ8WXF5 182 aa11.81□□□□□ -0.52
CUX1-217ENST00000558836 CGNQ9P2M7 1197 aaKnown RBP11.81□□□□□ -0.52
CUX1-217ENST00000558836 SFI1A8K8P3 1242 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 EML1O00423 815 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 TUBB4AP04350 444 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 ARHGAP25P42331 645 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 CXCL9Q07325 125 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 SPIRE1Q08AE8 756 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 TSR1Q2NL82 804 aaKnown RBP11.8□□□□□ -0.52
CUX1-217ENST00000558836 FAM26FQ5R3K3 315 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 RTKN2Q8IZC4 609 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 MYOCDQ8IZQ8 938 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 GUF1Q8N442 669 aaKnown RBP11.8□□□□□ -0.52
CUX1-217ENST00000558836 SMCR8Q8TEV9 937 aaPredicted RBP11.8□□□□□ -0.52
CUX1-217ENST00000558836 FAM151AQ8WW52 585 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 ARHGEF10LQ9HCE6 1279 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 BMP2KQ9NSY1 1161 aaPredicted RBP11.8□□□□□ -0.52
CUX1-217ENST00000558836 HDAC9Q9UKV0 1011 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 MRFAP1Q9Y605 127 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 ZNF646O15015 1829 aaPredicted RBP11.8□□□□□ -0.52
CUX1-217ENST00000558836 A0A1W2PQC6 194 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 ENC1O14682 589 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 CYP11B2P19099 503 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 KCNA4P22459 653 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 CASP5P51878 434 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 PPP2R3AQ06190 1150 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 TRIM14Q14142 442 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 KIF4BQ2VIQ3 1234 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 PIGOQ8TEQ8 1089 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 NOC3LQ8WTT2 800 aaKnown RBP11.8□□□□□ -0.52
CUX1-217ENST00000558836 CRACR2AQ9BSW2 395 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 NDST4Q9H3R1 872 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 HERC5Q9UII4 1024 aaKnown RBP11.8□□□□□ -0.52
CUX1-217ENST00000558836 DUSP10Q9Y6W6 482 aa11.8□□□□□ -0.52
CUX1-217ENST00000558836 RSPH10B2B2RC85 870 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 RSPH10BP0C881 870 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 SPATA31C1P0DKV0 1188 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 EHHADHQ08426 723 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 CTTNQ14247 550 aaKnown RBP11.79□□□□□ -0.52
CUX1-217ENST00000558836 VWA3BQ502W6 1294 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 LRRC55Q6ZSA7 311 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 KRT26Q7Z3Y9 468 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 FAM114A1Q8IWE2 563 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 DNAJC7Q99615 494 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 TTYH3Q9C0H2 523 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 NT5C3AQ9H0P0 336 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms