RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 DDX25Q9UHL0 483 aaKnown RBP8.09□□□□□ -1.11
VPS13C-206ENST00000558338 ADAMTSL1Q8N6G6 1762 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 CCDC151A5D8V7 595 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 B4DLN1 442 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 F8W031 263 aaPredicted RBP8.09□□□□□ -1.12
VPS13C-206ENST00000558338 KRT86O43790 486 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 SLC37A4O43826 429 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 COBLO75128 1261 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 ERLIN1O75477 346 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 TRIM37O94972 964 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 ZRANB2O95218 330 aaKnown RBP eCLIP8.09□□□□□ -1.12
VPS13C-206ENST00000558338 TDP2O95551 362 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 ZSCAN20P17040 1043 aaPredicted RBP8.09□□□□□ -1.12
VPS13C-206ENST00000558338 STK4Q13043 487 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 MAN2A1Q16706 1144 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 DOK7Q18PE1 504 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 VARS2Q5ST30 1063 aaKnown RBP8.09□□□□□ -1.12
VPS13C-206ENST00000558338 HYIQ5T013 277 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 STRIP1Q5VSL9 837 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 ANKRD40Q6AI12 368 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 CCDC84Q86UT8 332 aaPredicted RBP8.09□□□□□ -1.12
VPS13C-206ENST00000558338 SLC35F6Q8N357 371 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 KIAA0895Q8NCT3 520 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 MKL1Q969V6 931 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 PNMA5Q96PV4 448 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 TTYH3Q9C0H2 523 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 GBP3Q9H0R5 595 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 PSTPIP2Q9H939 334 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 KANSL2Q9H9L4 492 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 ARFGAP3Q9NP61 516 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 BLOC1S4Q9NUP1 217 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 SYNPO2Q9UMS6 1093 aa8.09□□□□□ -1.12
VPS13C-206ENST00000558338 SIPA1L1O43166 1804 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 RGPD3A6NKT7 1758 aaPredicted RBP8.08□□□□□ -1.12
VPS13C-206ENST00000558338 RGPD4Q7Z3J3 1758 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 EIF3CLB5ME19 914 aaKnown RBP8.08□□□□□ -1.12
VPS13C-206ENST00000558338 PNMA6AP0CW24 399 aaPredicted RBP8.08□□□□□ -1.12
VPS13C-206ENST00000558338 ARHGAP25P42331 645 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 USP11P51784 963 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 EIF6P56537 245 aaKnown RBP8.08□□□□□ -1.12
VPS13C-206ENST00000558338 TRAF1Q13077 416 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 HAUS3Q68CZ6 603 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 APOBEC3HQ6NTF7 200 aaKnown RBP8.08□□□□□ -1.12
VPS13C-206ENST00000558338 DPY19L2Q6NUT2 758 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 KIAA1328Q86T90 577 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 SLFN12Q8IYM2 578 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 LRRC15Q8TF66 581 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 RPGRIP1Q96KN7 1286 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 EIF3CQ99613 913 aaKnown RBP8.08□□□□□ -1.12
VPS13C-206ENST00000558338 SLF1Q9BQI6 1058 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 IDI2Q9BXS1 227 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 EDEM3Q9BZQ6 932 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 ZNF446Q9NWS9 450 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 PI4KBQ9UBF8 816 aa8.08□□□□□ -1.12
VPS13C-206ENST00000558338 CTAGE15A4D2H0 777 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 MYMKA6NI61 221 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 PSMD14O00487 310 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 PLSCR1O15162 318 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 GNA14O95837 355 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 CTAGE8P0CG41 777 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 FCER1AP12319 257 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 MCM3P25205 808 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 SCNN1DP51172 638 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 ATP2B2Q01814 1243 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 CKAP4Q07065 602 aaKnown RBP8.07□□□□□ -1.12
VPS13C-206ENST00000558338 VWA3BQ502W6 1294 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 STYK1Q6J9G0 422 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 TMEM179Q6ZVK1 233 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 CTAGE6Q86UF2 777 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 CTAGE4Q8IX94 777 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 CCDC65Q8IXS2 484 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 MFRPQ9BY79 579 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 NUCKS1Q9H1E3 243 aaKnown RBP8.07□□□□□ -1.12
VPS13C-206ENST00000558338 FHOD1Q9Y613 1164 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 ZNF646O15015 1829 aaPredicted RBP8.07□□□□□ -1.12
VPS13C-206ENST00000558338 MYH7BA7E2Y1 1941 aa8.07□□□□□ -1.12
VPS13C-206ENST00000558338 CYP3A7-CYP3A51PA0A087WV96 503 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 ANO9A1A5B4 782 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 CARNS1A5YM72 827 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 TBX3O15119 743 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 USO1O60763 962 aaKnown RBP8.06□□□□□ -1.12
VPS13C-206ENST00000558338 FOSP01100 380 aaPredicted RBP8.06□□□□□ -1.12
VPS13C-206ENST00000558338 CYP3A7P24462 503 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 HNRNPH3P31942 346 aaKnown RBP8.06□□□□□ -1.12
VPS13C-206ENST00000558338 HSPA1LP34931 641 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 SLC1A4P43007 532 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 EHHADHQ08426 723 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 GPS2Q13227 327 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 SPA17Q15506 151 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 UBE2SQ16763 222 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 CERKLQ49MI3 558 aaPredicted RBP8.06□□□□□ -1.12
VPS13C-206ENST00000558338 MIIPQ5JXC2 388 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 SLFN13Q68D06 897 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 IQCEQ6IPM2 695 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 CC2D1AQ6P1N0 951 aaPredicted RBP8.06□□□□□ -1.12
VPS13C-206ENST00000558338 ANKRD13AQ8IZ07 590 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 MYOCDQ8IZQ8 938 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 MSANTD4Q8NCY6 345 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 GMCL1P1Q8NEA9 526 aa8.06□□□□□ -1.12
VPS13C-206ENST00000558338 ERMNQ8TAM6 284 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms