RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 UNCXA6NJT0 531 aa6.22□□□□□ -1.41
SCFD1-219ENST00000556413 HGSO14964 777 aaPredicted RBP6.22□□□□□ -1.41
SCFD1-219ENST00000556413 SUSD5O60279 629 aa6.22□□□□□ -1.41
SCFD1-219ENST00000556413 CPP00450 1065 aa6.22□□□□□ -1.41
SCFD1-219ENST00000556413 LCP1P13796 627 aa6.22□□□□□ -1.41
SCFD1-219ENST00000556413 LARP1BQ659C4 914 aaKnown RBP6.22□□□□□ -1.41
SCFD1-219ENST00000556413 DENND5AQ6IQ26 1287 aa6.22□□□□□ -1.41
SCFD1-219ENST00000556413 LIMS2Q7Z4I7 341 aa6.22□□□□□ -1.41
SCFD1-219ENST00000556413 PPIL6Q8IXY8 311 aa6.22□□□□□ -1.41
SCFD1-219ENST00000556413 PCDHA2Q9Y5H9 948 aa6.22□□□□□ -1.41
SCFD1-219ENST00000556413 ZNF536O15090 1300 aa6.22□□□□□ -1.41
SCFD1-219ENST00000556413 TCRBV5S2A0A599 114 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 C9orf118A6NHY6 69 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 H7BY64 318 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 B4GALT3O60512 393 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 TADA3O75528 432 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 IL13P35225 146 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 LTBRP36941 435 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 KCNJ6P48051 423 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 GFRA1P56159 465 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 ZXDAP98168 799 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 LSAMPQ13449 338 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 CHRNA2Q15822 529 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 EMC4Q5J8M3 183 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 PRAMEF18Q5VWM3 479 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 STEAP3Q658P3 488 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 MRM1Q6IN84 353 aaKnown RBP6.21□□□□□ -1.42
SCFD1-219ENST00000556413 GLB1LQ6UWU2 654 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 CHST13Q8NET6 341 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 TOE1Q96GM8 510 aaKnown RBP6.21□□□□□ -1.42
SCFD1-219ENST00000556413 CCDC140Q96MF4 163 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 ZSWIM3Q96MP5 696 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 DTLQ9NZJ0 730 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 PCDHB4Q9Y5E5 795 aa6.21□□□□□ -1.42
SCFD1-219ENST00000556413 LRG1P02750 347 aa6.2□□□□□ -1.42
SCFD1-219ENST00000556413 CAPNS1P04632 268 aa6.2□□□□□ -1.42
SCFD1-219ENST00000556413 CYP1A1P04798 512 aaPredicted RBP6.2□□□□□ -1.42
SCFD1-219ENST00000556413 MLLT6P55198 1093 aaPredicted RBP6.2□□□□□ -1.42
SCFD1-219ENST00000556413 TNNI3KQ59H18 835 aa6.2□□□□□ -1.42
SCFD1-219ENST00000556413 TEPPQ6URK8 271 aa6.2□□□□□ -1.42
SCFD1-219ENST00000556413 TMEM145Q8NBT3 493 aa6.2□□□□□ -1.42
SCFD1-219ENST00000556413 MICAL1Q8TDZ2 1067 aa6.2□□□□□ -1.42
SCFD1-219ENST00000556413 MBD6Q96DN6 1003 aa6.2□□□□□ -1.42
SCFD1-219ENST00000556413 C1orf159Q96HA4 380 aa6.2□□□□□ -1.42
SCFD1-219ENST00000556413 CHAMP1Q96JM3 812 aa6.2□□□□□ -1.42
SCFD1-219ENST00000556413 YTHDC1Q96MU7 727 aaKnown RBP6.2□□□□□ -1.42
SCFD1-219ENST00000556413 PPP4R1LQ9P1A2 415 aa6.2□□□□□ -1.42
SCFD1-219ENST00000556413 ST6GALNAC2Q9UJ37 374 aa6.2□□□□□ -1.42
SCFD1-219ENST00000556413 LAMTOR5O43504 91 aa6.19□□□□□ -1.42
SCFD1-219ENST00000556413 AKAP8O43823 692 aaKnown RBP6.19□□□□□ -1.42
SCFD1-219ENST00000556413 DDAH1O94760 285 aa6.19□□□□□ -1.42
SCFD1-219ENST00000556413 SSBP05455 408 aaKnown RBP eCLIP6.19□□□□□ -1.42
SCFD1-219ENST00000556413 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.19□□□□□ -1.42
SCFD1-219ENST00000556413 DVL3Q92997 716 aaPredicted RBP6.19□□□□□ -1.42
SCFD1-219ENST00000556413 CLIC6Q96NY7 704 aa6.19□□□□□ -1.42
SCFD1-219ENST00000556413 TMEM168Q9H0V1 697 aa6.19□□□□□ -1.42
SCFD1-219ENST00000556413 L2HGDHQ9H9P8 463 aa6.19□□□□□ -1.42
SCFD1-219ENST00000556413 CAPN10Q9HC96 672 aa6.19□□□□□ -1.42
SCFD1-219ENST00000556413 CLDND1Q9NY35 253 aa6.19□□□□□ -1.42
SCFD1-219ENST00000556413 WASF3Q9UPY6 502 aa6.19□□□□□ -1.42
SCFD1-219ENST00000556413 ETFBP38117 255 aa6.18□□□□□ -1.42
SCFD1-219ENST00000556413 SURF1Q15526 300 aa6.18□□□□□ -1.42
SCFD1-219ENST00000556413 SLC35F1Q5T1Q4 408 aa6.18□□□□□ -1.42
SCFD1-219ENST00000556413 PLEKHH3Q7Z736 793 aa6.18□□□□□ -1.42
SCFD1-219ENST00000556413 ZCCHC14Q8WYQ9 949 aaKnown RBP6.18□□□□□ -1.42
SCFD1-219ENST00000556413 CDIP1Q9H305 208 aa6.18□□□□□ -1.42
SCFD1-219ENST00000556413 PRKAG3Q9UGI9 489 aa6.18□□□□□ -1.42
SCFD1-219ENST00000556413 NPFFR2Q9Y5X5 522 aa6.18□□□□□ -1.42
SCFD1-219ENST00000556413 CYP7B1O75881 506 aa6.17□□□□□ -1.42
SCFD1-219ENST00000556413 DGKIO75912 1065 aa6.17□□□□□ -1.42
SCFD1-219ENST00000556413 FXNQ16595 210 aa6.17□□□□□ -1.42
SCFD1-219ENST00000556413 TMEM209Q96SK2 561 aa6.17□□□□□ -1.42
SCFD1-219ENST00000556413 KRTAP17-1Q9BYP8 105 aa6.17□□□□□ -1.42
SCFD1-219ENST00000556413 EPB41L1Q9H4G0 881 aa6.17□□□□□ -1.42
SCFD1-219ENST00000556413 MYOTQ9UBF9 498 aa6.17□□□□□ -1.42
SCFD1-219ENST00000556413 CROTQ9UKG9 612 aa6.17□□□□□ -1.42
SCFD1-219ENST00000556413 GRIA2P42262 883 aa6.16□□□□□ -1.42
SCFD1-219ENST00000556413 ICAM4Q14773 271 aa6.16□□□□□ -1.42
SCFD1-219ENST00000556413 PKN3Q6P5Z2 889 aa6.16□□□□□ -1.42
SCFD1-219ENST00000556413 VPS37DQ86XT2 251 aa6.16□□□□□ -1.42
SCFD1-219ENST00000556413 SMOC1Q9H4F8 434 aa6.16□□□□□ -1.42
SCFD1-219ENST00000556413 NPEPPSL1A6NEC2 478 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 GPR42O15529 346 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 GJB6O95452 261 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 PPP2CBP62714 309 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 PPP2R2AP63151 447 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 PPP2CAP67775 309 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 CDSNQ15517 529 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 SLC10A6Q3KNW5 377 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 TMC5Q6UXY8 1006 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 EEPD1Q7L9B9 569 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 SPRED1Q7Z699 444 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 PHOSPHO1Q8TCT1 267 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 IGDCC4Q8TDY8 1250 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 CD248Q9HCU0 757 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 HSPBP1Q9NZL4 362 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 RBPJLQ9UBG7 517 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 ASH2LQ9UBL3 628 aa6.15□□□□□ -1.42
SCFD1-219ENST00000556413 MAFKO60675 156 aa6.14□□□□□ -1.43
SCFD1-219ENST00000556413 FSHBP01225 129 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 545.5 ms