RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 GPC4O75487 556 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 PSMC2P35998 433 aaKnown RBP18.97■□□□□ 0.63
SYNE3-204ENST00000555759 MDH1P40925 334 aaKnown RBP18.97■□□□□ 0.63
SYNE3-204ENST00000555759 FBXW10Q5XX13 1052 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 TPH2Q8IWU9 490 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 USP17L12C9JPN9 530 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 USP17L21D6R901 530 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 ADCY1Q08828 1119 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 PPM1KQ8N3J5 372 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 PPWD1Q96BP3 646 aaKnown RBP18.97■□□□□ 0.63
SYNE3-204ENST00000555759 WDR24Q96S15 920 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 DDX25Q9UHL0 483 aaKnown RBP18.97■□□□□ 0.63
SYNE3-204ENST00000555759 WDR7Q9Y4E6 1490 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 TOB2Q14106 344 aaPredicted RBP18.97■□□□□ 0.63
SYNE3-204ENST00000555759 PPP2R5DQ14738 602 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 GRAMD1BQ3KR37 738 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 CCDC92Q53HC0 331 aaPredicted RBP18.97■□□□□ 0.63
SYNE3-204ENST00000555759 TMCO4Q5TGY1 634 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 CADPS2Q86UW7 1296 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 PIP4K2CQ8TBX8 421 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 TBK1Q9UHD2 729 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 GRAMD4Q6IC98 578 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 TEX2Q8IWB9 1127 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 RHOT2Q8IXI1 618 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 ZNF710Q8N1W2 664 aa18.97■□□□□ 0.63
SYNE3-204ENST00000555759 H0Y3Z8 333 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 LIFRP42702 1097 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 ZNF473Q8WTR7 871 aaKnown RBP18.96■□□□□ 0.63
SYNE3-204ENST00000555759 EEF2KMTQ96G04 330 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 LRRC37BQ96QE4 947 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 IRAK4Q9NWZ3 460 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 MIF4GDA9UHW6 222 aaKnown RBP18.96■□□□□ 0.63
SYNE3-204ENST00000555759 MAPK4P31152 587 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 CAV1Q03135 178 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 ARHGEF10LQ9HCE6 1279 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 GAP43P17677 238 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 RAD23BP54727 409 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 PTK2Q05397 1052 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 MAEAQ7L5Y9 396 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 GSPT2Q8IYD1 628 aaKnown RBP18.96■□□□□ 0.63
SYNE3-204ENST00000555759 ZNF653Q96CK0 615 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 CPSF1Q10570 1443 aaKnown RBP18.96■□□□□ 0.63
SYNE3-204ENST00000555759 HNRNPCL1O60812 293 aaKnown RBP18.96■□□□□ 0.63
SYNE3-204ENST00000555759 SEMA3FQ13275 785 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 TRAIPQ9BWF2 469 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 ZFP69BQ9UJL9 534 aa18.96■□□□□ 0.63
SYNE3-204ENST00000555759 H0YCG3 227 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 PALMO75781 387 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 P4HA1P13674 534 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 SNX1Q13596 522 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 RINT1Q6NUQ1 792 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 ALKBH5Q6P6C2 394 aaKnown RBP18.95■□□□□ 0.62
SYNE3-204ENST00000555759 APLFQ8IW19 511 aaPredicted RBP18.95■□□□□ 0.62
SYNE3-204ENST00000555759 SYNGAP1Q96PV0 1343 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 SGK1O00141 431 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 FGGP02679 453 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 IL17REQ8NFR9 667 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 FAM96AQ9H5X1 160 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 ETNK1Q9HBU6 452 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 IQANK1A0A1B0GTG1 560 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 GAS7O60861 476 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 PDE1BQ01064 536 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 PPP4R3CPQ6ZMV5 832 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 ERVK-7P63135 1459 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 REREQ9P2R6 1566 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 KLRF2D3W0D1 207 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 AFG3L2Q9Y4W6 797 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 PCDHB6Q9Y5E3 794 aa18.95■□□□□ 0.62
SYNE3-204ENST00000555759 EEF1DP29692 281 aaKnown RBP18.94■□□□□ 0.62
SYNE3-204ENST00000555759 AP2B1P63010 937 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 IQCB1Q15051 598 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 TLR7Q9NYK1 1049 aaKnown RBP18.94■□□□□ 0.62
SYNE3-204ENST00000555759 TTC37Q6PGP7 1564 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 PRPF3O43395 683 aaKnown RBP18.94■□□□□ 0.62
SYNE3-204ENST00000555759 PMS2P54278 862 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 LRIG3Q6UXM1 1119 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 NYAP1Q6ZVC0 841 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 SMCR8Q8TEV9 937 aaPredicted RBP18.94■□□□□ 0.62
SYNE3-204ENST00000555759 GPKOWQ92917 476 aaPredicted RBP eCLIP18.94■□□□□ 0.62
SYNE3-204ENST00000555759 DYDC2Q96IM9 177 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 SLITRK6Q9H5Y7 841 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 PSTPIP2Q9H939 334 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 JADE1Q6IE81 842 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 MAP7D3Q8IWC1 876 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 SCYL1Q96KG9 808 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 CEP72Q9P209 647 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 PRPF6O94906 941 aaKnown RBP18.94■□□□□ 0.62
SYNE3-204ENST00000555759 BSPRYQ5W0U4 402 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 OTUD6AQ7L8S5 288 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 THOC1Q96FV9 657 aaKnown RBP18.94■□□□□ 0.62
SYNE3-204ENST00000555759 CCDC138Q96M89 665 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 CCT8L2Q96SF2 557 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 EIF6P56537 245 aaKnown RBP18.94■□□□□ 0.62
SYNE3-204ENST00000555759 MDM2Q00987 491 aaPredicted RBP18.94■□□□□ 0.62
SYNE3-204ENST00000555759 CDR2Q01850 454 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 KAZNQ674X7 775 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 INTUQ9ULD6 942 aa18.94■□□□□ 0.62
SYNE3-204ENST00000555759 HAUS5O94927 633 aa18.93■□□□□ 0.62
SYNE3-204ENST00000555759 STX1BP61266 288 aa18.93■□□□□ 0.62
SYNE3-204ENST00000555759 TCIRG1Q13488 830 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms