RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 RILPQ96NA2 401 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 ZNF577Q9BSK1 485 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 RFX7Q2KHR2 1363 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 BBOX1O75936 387 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 PLEKHA8P1O95397 391 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 EIF4A3P38919 411 aaKnown RBP16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 KRT31Q15323 416 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 SLFNL1Q499Z3 407 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 SUSD4Q5VX71 490 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 BSPRYQ5W0U4 402 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 TBC1D10CQ8IV04 446 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 BRIP1Q9BX63 1249 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 STK38LQ9Y2H1 464 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 POLR2BP30876 1174 aaKnown RBP16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 POLGP54098 1239 aaPredicted RBP16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 MAGOHBQ96A72 148 aaKnown RBP16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 QTRT2Q9H974 415 aaKnown RBP16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 DISC1Q9NRI5 854 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 PGRMC1O00264 195 aaKnown RBP16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 LIG3P49916 1009 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 SARNPP82979 210 aaKnown RBP16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 ARID5BQ14865 1188 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 CLEC17AQ6ZS10 378 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 WDR11Q9BZH6 1224 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 CEMIPQ8WUJ3 1361 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 MST1RQ04912 1400 aa16.71■□□□□ 0.27
ARHGEF40-202ENST00000553709 LRRIQ4A6NIV6 560 aa16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 MYO1FO00160 1098 aa16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 MFAP3LO75121 409 aa16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 CCT5P48643 541 aa16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 NT5C2P49902 561 aa16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 C2orf54Q08AI8 447 aa16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 BFSP1Q12934 665 aa16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 SCYL2Q6P3W7 929 aa16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 RNF10Q8N5U6 811 aaKnown RBP16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 FAM133AQ8N9E0 248 aa16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 CSRNP1Q96S65 589 aa16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 BSDC1Q9NW68 430 aaPredicted RBP16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 ZNF148Q9UQR1 794 aa16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 FAN1Q9Y2M0 1017 aa16.71■□□□□ 0.26
ARHGEF40-202ENST00000553709 STK36Q9NRP7 1315 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 HNRNPDLO14979 420 aaKnown RBP16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 SORBS3O60504 671 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 MOCS3O95396 460 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 EMILIN3Q9NT22 766 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 USP17L3A6NCW0 530 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 USP17L4A6NCW7 530 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 TMEM191BP0C7N4 346 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 DIXDC1Q155Q3 683 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 ZNF772Q68DY9 489 aaPredicted RBP16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 TTC19Q6DKK2 380 aaPredicted RBP16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 USP17L1Q7RTZ2 530 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 DGKHQ86XP1 1220 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 NDST4Q9H3R1 872 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 WDR19Q8NEZ3 1342 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 GIPC1O14908 333 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 UBXN2AP68543 259 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 CAPN12Q6ZSI9 719 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 CSADQ9Y600 493 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 SERPINB2P05120 415 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 PIK3CAP42336 1068 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 DMTNQ08495 405 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 TMTC3Q6ZXV5 915 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.7■□□□□ 0.267e-11■□□□□ 10
ARHGEF40-202ENST00000553709 PAGR1Q9BTK6 254 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 MIS12Q9H081 205 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 GOLPH3LQ9H4A5 285 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 SUGCTQ9HAC7 445 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 DAAM1Q9Y4D1 1078 aa16.7■□□□□ 0.26
ARHGEF40-202ENST00000553709 MAN1A1P33908 653 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 CCDC38Q502W7 563 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 ANKRD35Q8N283 1001 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 MB21D1Q8N884 522 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 SH3GLB2Q9NR46 395 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 ZDHHC9Q9Y397 364 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 CXCR5P32302 372 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 ZNF579Q8NAF0 562 aaKnown RBP16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 HAUS1Q96CS2 278 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 RAB3IPQ96QF0 476 aaPredicted RBP16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 NACC1Q96RE7 527 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 TTLL3Q9Y4R7 772 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 PALLDQ8WX93 1383 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 CLIC2O15247 247 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 FTCDO95954 541 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 CYP2E1P05181 493 aaPredicted RBP16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 LRRC63Q05C16 580 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 CFAP57Q96MR6 1250 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 ANKFY1Q9P2R3 1169 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 PCDHA13Q9Y5I0 950 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 KIF13AQ9H1H9 1805 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 NEDD4P46934 1319 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 SERPING1P05155 500 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 FAM196AQ6ZSG2 479 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 FMR1NBQ8N0W7 255 aaPredicted RBP16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 NSMCE1Q8WV22 266 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 ACCSQ96QU6 501 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 NRBP2Q9NSY0 501 aa16.69■□□□□ 0.26
ARHGEF40-202ENST00000553709 MEIS1O00470 390 aa16.68■□□□□ 0.26
ARHGEF40-202ENST00000553709 KIF11P52732 1056 aa16.68■□□□□ 0.26
ARHGEF40-202ENST00000553709 CYP27A1Q02318 531 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms