RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 MMP3P08254 477 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 GNA11P29992 359 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 CCT2P78371 535 aaKnown RBP17.58■□□□□ 0.4
SHMT2-204ENST00000553324 PTPN11Q06124 597 aaPredicted RBP17.58■□□□□ 0.4
SHMT2-204ENST00000553324 NTRK3Q16288 839 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 MYSM1Q5VVJ2 828 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 NFRKBQ6P4R8 1299 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 TRIM22Q8IYM9 498 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 TDHQ8IZJ6 230 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 GIMAP8Q8ND71 665 aaPredicted RBP17.58■□□□□ 0.4
SHMT2-204ENST00000553324 IL17RAQ96F46 866 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 SPATA33Q96N06 139 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 SENP7Q9BQF6 1050 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 RTEL1Q9NZ71 1219 aa17.58■□□□□ 0.4
SHMT2-204ENST00000553324 ALPK3Q96L96 1907 aa17.57■□□□□ 0.4
SHMT2-204ENST00000553324 GGPS1O95749 300 aa17.57■□□□□ 0.4
SHMT2-204ENST00000553324 PSMC6P62333 389 aa17.57■□□□□ 0.4
SHMT2-204ENST00000553324 AP3B2Q13367 1082 aa17.57■□□□□ 0.4
SHMT2-204ENST00000553324 UBE2SQ16763 222 aa17.57■□□□□ 0.4
SHMT2-204ENST00000553324 BICD2Q8TD16 824 aa17.57■□□□□ 0.4
SHMT2-204ENST00000553324 BADQ92934 168 aa17.57■□□□□ 0.4
SHMT2-204ENST00000553324 GPRASP2Q96D09 838 aa17.57■□□□□ 0.4
SHMT2-204ENST00000553324 KATNAL1Q9BW62 490 aa17.57■□□□□ 0.4
SHMT2-204ENST00000553324 ZMYND12Q9H0C1 365 aa17.57■□□□□ 0.4
SHMT2-204ENST00000553324 C6orf50Q9HD87 102 aa17.57■□□□□ 0.4
SHMT2-204ENST00000553324 TBX21Q9UL17 535 aa17.57■□□□□ 0.4
SHMT2-204ENST00000553324 LRRC37A2A6NM11 1700 aa17.56■□□□□ 0.4
SHMT2-204ENST00000553324 ESYT2A0FGR8 921 aa17.56■□□□□ 0.4
SHMT2-204ENST00000553324 UBA1P22314 1058 aaKnown RBP17.56■□□□□ 0.4
SHMT2-204ENST00000553324 SP2Q02086 613 aa17.56■□□□□ 0.4
SHMT2-204ENST00000553324 SSRP1Q08945 709 aaKnown RBP17.56■□□□□ 0.4
SHMT2-204ENST00000553324 NBPF20Q3BBV1 942 aa17.56■□□□□ 0.4
SHMT2-204ENST00000553324 TYW1BQ6NUM6 668 aa17.56■□□□□ 0.4
SHMT2-204ENST00000553324 CCDC148Q8NFR7 591 aa17.56■□□□□ 0.4
SHMT2-204ENST00000553324 PHKBQ93100 1093 aa17.56■□□□□ 0.4
SHMT2-204ENST00000553324 SLC26A6Q9BXS9 759 aa17.56■□□□□ 0.4
SHMT2-204ENST00000553324 CDKL5O76039 1030 aa17.55■□□□□ 0.4
SHMT2-204ENST00000553324 PKN1Q16512 942 aa17.55■□□□□ 0.4
SHMT2-204ENST00000553324 MFSD5Q6N075 450 aa17.55■□□□□ 0.4
SHMT2-204ENST00000553324 METTL7BQ6UX53 244 aa17.55■□□□□ 0.4
SHMT2-204ENST00000553324 FAM177A1Q8N128 213 aaPredicted RBP17.55■□□□□ 0.4
SHMT2-204ENST00000553324 TMEM199Q8N511 208 aa17.55■□□□□ 0.4
SHMT2-204ENST00000553324 ZFP91Q96JP5 570 aaPredicted RBP17.55■□□□□ 0.4
SHMT2-204ENST00000553324 NCOA5Q9HCD5 579 aaKnown RBP17.55■□□□□ 0.4
SHMT2-204ENST00000553324 SH3GLB2Q9NR46 395 aa17.55■□□□□ 0.4
SHMT2-204ENST00000553324 NOP56O00567 594 aaKnown RBP17.54■□□□□ 0.4
SHMT2-204ENST00000553324 B4GALT4O60513 344 aa17.54■□□□□ 0.4
SHMT2-204ENST00000553324 HOXD8P13378 290 aaPredicted RBP17.54■□□□□ 0.4
SHMT2-204ENST00000553324 CLK2P49760 499 aaKnown RBP17.54■□□□□ 0.4
SHMT2-204ENST00000553324 HSDL1Q3SXM5 330 aa17.54■□□□□ 0.4
SHMT2-204ENST00000553324 LRIT3Q3SXY7 679 aa17.54■□□□□ 0.4
SHMT2-204ENST00000553324 FAM47CQ5HY64 1035 aa17.54■□□□□ 0.4
SHMT2-204ENST00000553324 SESTD1Q86VW0 696 aa17.54■□□□□ 0.4
SHMT2-204ENST00000553324 SLKQ9H2G2 1235 aaPredicted RBP17.54■□□□□ 0.4
SHMT2-204ENST00000553324 JADE2Q9NQC1 790 aa17.54■□□□□ 0.4
SHMT2-204ENST00000553324 UBIAD1Q9Y5Z9 338 aa17.54■□□□□ 0.4
SHMT2-204ENST00000553324 DEXIO95424 95 aa17.53■□□□□ 0.4
SHMT2-204ENST00000553324 SEC24BO95487 1268 aa17.53■□□□□ 0.4
SHMT2-204ENST00000553324 ITGB8P26012 769 aa17.53■□□□□ 0.4
SHMT2-204ENST00000553324 FXR1P51114 621 aaKnown RBP eCLIP17.53■□□□□ 0.4
SHMT2-204ENST00000553324 FPGSQ05932 587 aa17.53■□□□□ 0.4
SHMT2-204ENST00000553324 MTMR1Q13613 665 aa17.53■□□□□ 0.4
SHMT2-204ENST00000553324 CYFIP1Q7L576 1253 aa17.53■□□□□ 0.4
SHMT2-204ENST00000553324 LARP6Q9BRS8 491 aaKnown RBP17.53■□□□□ 0.4
SHMT2-204ENST00000553324 ANO3Q9BYT9 981 aa17.53■□□□□ 0.4
SHMT2-204ENST00000553324 TRPV6Q9H1D0 765 aa17.53■□□□□ 0.4
SHMT2-204ENST00000553324 HIPK3Q9H422 1215 aa17.53■□□□□ 0.4
SHMT2-204ENST00000553324 F2P00734 622 aa17.52■□□□□ 0.4
SHMT2-204ENST00000553324 ITGB5P18084 799 aa17.52■□□□□ 0.4
SHMT2-204ENST00000553324 ZNF76P36508 570 aa17.52■□□□□ 0.4
SHMT2-204ENST00000553324 SREBF1P36956 1147 aa17.52■□□□□ 0.4
SHMT2-204ENST00000553324 STK3Q13188 491 aa17.52■□□□□ 0.4
SHMT2-204ENST00000553324 SEMA3FQ13275 785 aa17.52■□□□□ 0.4
SHMT2-204ENST00000553324 PPIGQ13427 754 aaKnown RBP eCLIP17.52■□□□□ 0.43e-10■□□□□ 10.6
SHMT2-204ENST00000553324 REXO1Q8N1G1 1221 aaKnown RBP17.52■□□□□ 0.4
SHMT2-204ENST00000553324 C7orf31Q8N865 590 aa17.52■□□□□ 0.4
SHMT2-204ENST00000553324 KAT2BQ92831 832 aa17.52■□□□□ 0.4
SHMT2-204ENST00000553324 MXRA8Q9BRK3 442 aa17.52■□□□□ 0.4
SHMT2-204ENST00000553324 NOD1Q9Y239 953 aa17.52■□□□□ 0.4
SHMT2-204ENST00000553324 PFKFB2O60825 505 aa17.51■□□□□ 0.39
SHMT2-204ENST00000553324 PSEN2P49810 448 aa17.51■□□□□ 0.39
SHMT2-204ENST00000553324 NEK4P51957 841 aa17.51■□□□□ 0.39
SHMT2-204ENST00000553324 AK2P54819 239 aa17.51■□□□□ 0.39
SHMT2-204ENST00000553324 NLRP5P59047 1200 aa17.51■□□□□ 0.39
SHMT2-204ENST00000553324 CHMP4BP1P59074 171 aa17.51■□□□□ 0.39
SHMT2-204ENST00000553324 CEP55Q53EZ4 464 aa17.51■□□□□ 0.39
SHMT2-204ENST00000553324 GALNT17Q6IS24 598 aa17.51■□□□□ 0.39
SHMT2-204ENST00000553324 TRMT13Q9NUP7 481 aaKnown RBP17.51■□□□□ 0.39
SHMT2-204ENST00000553324 TPCN1Q9ULQ1 816 aa17.51■□□□□ 0.39
SHMT2-204ENST00000553324 HAS3O00219 553 aa17.5■□□□□ 0.39
SHMT2-204ENST00000553324 CYP3A4P08684 503 aa17.5■□□□□ 0.39
SHMT2-204ENST00000553324 XBP1P17861 261 aa17.5■□□□□ 0.39
SHMT2-204ENST00000553324 ARHGAP4P98171 946 aa17.5■□□□□ 0.39
SHMT2-204ENST00000553324 SCRN1Q12765 414 aa17.5■□□□□ 0.39
SHMT2-204ENST00000553324 MFSD10Q14728 455 aa17.5■□□□□ 0.39
SHMT2-204ENST00000553324 KIAA0753Q2KHM9 967 aa17.5■□□□□ 0.39
SHMT2-204ENST00000553324 JAKMIP3Q5VZ66 844 aa17.5■□□□□ 0.39
SHMT2-204ENST00000553324 NIPA1Q7RTP0 329 aa17.5■□□□□ 0.39
SHMT2-204ENST00000553324 RPUSD2Q8IZ73 545 aaKnown RBP17.5■□□□□ 0.39
SHMT2-204ENST00000553324 GPR20Q99678 358 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms