RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 SURF6O75683 361 aaKnown RBP5.7□□□□□ -1.5
LIMS1-214ENST00000542845 NDUFB10O96000 172 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 CKBP12277 381 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 NBL1P41271 181 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 RRP1P56182 461 aaKnown RBP5.7□□□□□ -1.5
LIMS1-214ENST00000542845 PTPN11Q06124 597 aaPredicted RBP5.7□□□□□ -1.5
LIMS1-214ENST00000542845 PDE4BQ07343 736 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 TMEM259Q4ZIN3 620 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 MUM1L1Q5H9M0 696 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 ZNF618Q5T7W0 954 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 CHST3Q7LGC8 479 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 FBXO11Q86XK2 927 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 FAM9BQ8IZU0 186 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 RDH13Q8NBN7 331 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 DBF4BQ8NFT6 615 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 CAGE1Q8TC20 777 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 ASIC4Q96FT7 647 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 RIPOR3Q96MK2 946 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.7□□□□□ -1.5
LIMS1-214ENST00000542845 ADAM33Q9BZ11 813 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 MKNK2Q9HBH9 465 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 GDPD2Q9HCC8 539 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 MRS2Q9HD23 443 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 VTA1Q9NP79 307 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 LIMD1Q9UGP4 676 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 FEM1BQ9UK73 627 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 RAD50Q92878 1312 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 ZNF532Q9HCE3 1301 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 PTPRZ1P23471 2315 aaPredicted RBP5.69□□□□□ -1.5
LIMS1-214ENST00000542845 RCCD1A6NED2 376 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 KPNA6O60684 536 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 LGR5O75473 907 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 BCAR3O75815 825 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 AP1G2O75843 785 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 CXCL10P02778 98 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 GNAI2P04899 355 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 TXNP10599 105 aaKnown RBP5.69□□□□□ -1.5
LIMS1-214ENST00000542845 PDE6AP16499 860 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 HTRA4P83105 476 aaPredicted RBP5.69□□□□□ -1.5
LIMS1-214ENST00000542845 LSM11P83369 360 aaKnown RBP eCLIP5.69□□□□□ -1.5
LIMS1-214ENST00000542845 ADAM15Q13444 863 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 COL9A2Q14055 689 aaPredicted RBP5.69□□□□□ -1.5
LIMS1-214ENST00000542845 CTC1Q2NKJ3 1217 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 SLFNL1Q499Z3 407 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 C12orf60Q5U649 245 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 C16orf86Q6ZW13 317 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 FIBCD1Q8N539 461 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 C7orf31Q8N865 590 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 TMEM105Q8N8V8 129 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 DHX38Q92620 1227 aaKnown RBP5.69□□□□□ -1.5
LIMS1-214ENST00000542845 CHAMP1Q96JM3 812 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 ZNF512BQ96KM6 892 aaPredicted RBP5.69□□□□□ -1.5
LIMS1-214ENST00000542845 DNAJC2Q99543 621 aaKnown RBP5.69□□□□□ -1.5
LIMS1-214ENST00000542845 API5Q9BZZ5 524 aaKnown RBP5.69□□□□□ -1.5
LIMS1-214ENST00000542845 MFSD1Q9H3U5 465 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 GPR108Q9NPR9 543 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 CYP39A1Q9NYL5 469 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 DBNLQ9UJU6 430 aaKnown RBP5.69□□□□□ -1.5
LIMS1-214ENST00000542845 MTMR7Q9Y216 660 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 MICAL3Q7RTP6 2002 aa5.69□□□□□ -1.5
LIMS1-214ENST00000542845 TRIOO75962 3097 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 SCN10AQ9Y5Y9 1956 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 PTPDC1A2A3K4 754 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 MINDY4BA8MYZ0 360 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 GOLIM4O00461 696 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 IGSF3O75054 1194 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 PPFIA3O75145 1194 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 MBD4O95243 580 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 PARNO95453 639 aaKnown RBP5.68□□□□□ -1.5
LIMS1-214ENST00000542845 BMP3P12645 472 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 CALML3P27482 149 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 NRIP1P48552 1158 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 ALDH5A1P51649 535 aaPredicted RBP5.68□□□□□ -1.5
LIMS1-214ENST00000542845 OAZ1P54368 228 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 ZNF200P98182 395 aaPredicted RBP5.68□□□□□ -1.5
LIMS1-214ENST00000542845 MTX1Q13505 466 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 BAATQ14032 418 aaPredicted RBP5.68□□□□□ -1.5
LIMS1-214ENST00000542845 COL19A1Q14993 1142 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 PPP2R5BQ15173 497 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 PTPN21Q16825 1174 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 ST3GAL2Q16842 350 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 ALDH1L2Q3SY69 923 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 PPP4R3BQ5MIZ7 849 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 SLFN13Q68D06 897 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 MCTP2Q6DN12 878 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 LRRC47Q8N1G4 583 aaKnown RBP5.68□□□□□ -1.5
LIMS1-214ENST00000542845 FLCNQ8NFG4 579 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 SPIRE2Q8WWL2 714 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 EAF2Q96CJ1 260 aaPredicted RBP5.68□□□□□ -1.5
LIMS1-214ENST00000542845 CALR3Q96L12 384 aaKnown RBP5.68□□□□□ -1.5
LIMS1-214ENST00000542845 APOL5Q9BWW9 433 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 PHF7Q9BWX1 381 aaPredicted RBP5.68□□□□□ -1.5
LIMS1-214ENST00000542845 IFIH1Q9BYX4 1025 aaKnown RBP5.68□□□□□ -1.5
LIMS1-214ENST00000542845 NYAP2Q9P242 653 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 HDAC6Q9UBN7 1215 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 ADD3Q9UEY8 706 aaKnown RBP5.68□□□□□ -1.5
LIMS1-214ENST00000542845 BARX2Q9UMQ3 279 aaPredicted RBP5.68□□□□□ -1.5
LIMS1-214ENST00000542845 USP15Q9Y4E8 981 aaPredicted RBP5.68□□□□□ -1.5
LIMS1-214ENST00000542845 SLC4A4Q9Y6R1 1079 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 MYO7AQ13402 2215 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms