RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 SYNRGQ9UMZ2 1314 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 NPHP3-ACAD11A0A0J9YXS1 232 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 TRAF5O00463 557 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 MEIS1O00470 390 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 PPP1R12BO60237 982 aaPredicted RBP13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 RHOBTB3O94955 611 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 EIF2AK2P19525 551 aaKnown RBP13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 ERCC5P28715 1186 aaPredicted RBP13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 CDC25BP30305 580 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 PMS1P54277 932 aaKnown RBP13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 ASIC1P78348 528 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 MRPS9P82933 396 aaKnown RBP13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 KCNB1Q14721 858 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 CEP55Q53EZ4 464 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 NSMFQ6X4W1 530 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 DYMQ7RTS9 669 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 CCDC186Q7Z3E2 898 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 CATSPER3Q86XQ3 398 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 SLC5A5Q92911 643 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 CDK5RAP3Q96JB5 506 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 R3HDMLQ9H3Y0 253 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 STK17AQ9UEE5 414 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 FRMPD4Q14CM0 1322 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 A0A0G2JMZ2 1700 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 TRIM49BA6NDI0 452 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 PSMD10O75832 226 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 GJA5P36382 358 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 STK4Q13043 487 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 BAATQ14032 418 aaPredicted RBP13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 SV2BQ7L1I2 683 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 TEX2Q8IWB9 1127 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 DRC7Q8IY82 874 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 GLIS3Q8NEA6 775 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 ZC3H15Q8WU90 426 aaKnown RBP13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 FAM20AQ96MK3 541 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 WDR11Q9BZH6 1224 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 RGL1Q9NZL6 768 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 PKD2L1Q9P0L9 805 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 DACH1Q9UI36 760 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 ZKSCAN5Q9Y2L8 839 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 CTDP1Q9Y5B0 961 aaPredicted RBP13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 CSADQ9Y600 493 aa13.75□□□□□ -0.21
AP003559.1-201ENST00000540906 CHMP2AO43633 222 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 IREB2P48200 963 aaKnown RBP13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 CYP4A11Q02928 519 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 LRMPQ12912 555 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 TTLL12Q14166 644 aaPredicted RBP13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 MAP1SQ66K74 1059 aaPredicted RBP13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 OTOP1Q7RTM1 612 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 APTXQ7Z2E3 356 aaKnown RBP13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 MCF2L2Q86YR7 1114 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 ADSSL1Q8N142 457 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 C17orf53Q8N3J3 647 aaPredicted RBP13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 KIAA0895Q8NCT3 520 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 GIMAP8Q8ND71 665 aaPredicted RBP13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 NELFBQ8WX92 580 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 DNAJC19Q96DA6 116 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 MXRA8Q9BRK3 442 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 RRAGCQ9HB90 399 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 NMRK2Q9NPI5 230 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 RMND1Q9NWS8 449 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 PYCARDQ9ULZ3 195 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 A0A0G2JLL6 359 aaPredicted RBP13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 CACNB1Q02641 598 aaPredicted RBP13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 PDE4DQ08499 809 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 MOGSQ13724 837 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 CDKAL1Q5VV42 579 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 SPATA1Q5VX52 437 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 GADL1Q6ZQY3 521 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 RNF207Q6ZRF8 634 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 PRRT2Q7Z6L0 340 aaPredicted RBP13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 FAM43AQ8N2R8 423 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 DDX12PQ92771 950 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 EIF2AK1Q9BQI3 630 aaKnown RBP13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 UNC45AQ9H3U1 944 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 BCAS3Q9H6U6 928 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 BTBD7Q9P203 1132 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 UBIAD1Q9Y5Z9 338 aa13.74□□□□□ -0.21
AP003559.1-201ENST00000540906 SPDYE5A6NIY4 337 aa13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 SSBP05455 408 aaKnown RBP eCLIP13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 MYL1P05976 194 aa13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 PLA2G4BP0C869 781 aa13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 ITGB3BPQ13352 177 aaPredicted RBP13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 CTTNQ14247 550 aaKnown RBP13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 PGM5Q15124 567 aa13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 ARSHQ5FYA8 562 aa13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 LRCH2Q5VUJ6 765 aa13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 B3GNT9Q6UX72 402 aa13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 FGFBP2Q9BYJ0 223 aa13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 EHMT1Q9H9B1 1298 aa13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 PXMP2Q9NR77 195 aa13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 WRAP73Q9P2S5 460 aaPredicted RBP13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 ZC3H4Q9UPT8 1303 aaKnown RBP13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 KDM3AQ9Y4C1 1321 aa13.73□□□□□ -0.21
AP003559.1-201ENST00000540906 DDX39AO00148 427 aaKnown RBP13.72□□□□□ -0.21
AP003559.1-201ENST00000540906 ATP2A1O14983 1001 aa13.72□□□□□ -0.21
AP003559.1-201ENST00000540906 ZBTB39O15060 712 aa13.72□□□□□ -0.21
AP003559.1-201ENST00000540906 FDX1P10109 184 aa13.72□□□□□ -0.21
AP003559.1-201ENST00000540906 OAZ1P54368 228 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms