RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 NEK11Q8NG66 645 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 ACER1Q8TDN7 264 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 HAS1Q92839 578 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 IKZF4Q9H2S9 585 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 ZNF277Q9NRM2 450 aaPredicted RBP9.66□□□□□ -0.86
UBE3B-208ENST00000538070 FAM198AQ9UFP1 575 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 SWAP70Q9UH65 585 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 MYO6Q9UM54 1294 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 PRPF6O94906 941 aaKnown RBP9.66□□□□□ -0.86
UBE3B-208ENST00000538070 CLSTN1O94985 981 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 TUBB4AP04350 444 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 POLR2FP61218 127 aaKnown RBP9.66□□□□□ -0.86
UBE3B-208ENST00000538070 JAG1P78504 1218 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 CTTNQ14247 550 aaKnown RBP9.66□□□□□ -0.86
UBE3B-208ENST00000538070 KSR1Q8IVT5 923 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 LARGE2Q8N3Y3 721 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 CCDC51Q96ER9 411 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 C7orf25Q9BPX7 421 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 ZBTB39O15060 712 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 KRT86O43790 486 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 SORBS3O60504 671 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 MOCS3O95396 460 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 TRIM14Q14142 442 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 WDR59Q6PJI9 974 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 UNC13DQ70J99 1090 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 SH3BP5LQ7L8J4 393 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 LSM14BQ9BX40 385 aaKnown RBP9.66□□□□□ -0.86
UBE3B-208ENST00000538070 KCND1Q9NSA2 647 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 EHD2Q9NZN4 543 aa9.66□□□□□ -0.86
UBE3B-208ENST00000538070 REXO2Q9Y3B8 237 aaKnown RBP9.66□□□□□ -0.86
UBE3B-208ENST00000538070 ROBO3Q96MS0 1386 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 COL22A1Q8NFW1 1626 aaPredicted RBP9.65□□□□□ -0.86
UBE3B-208ENST00000538070 LRRC53A6NM62 1247 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 NCK2O43639 380 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 ARHGAP4P98171 946 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 RASSF7Q02833 373 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 VWA3BQ502W6 1294 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 FAM83BQ5T0W9 1011 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 C15orf52Q6ZUT6 534 aaKnown RBP9.65□□□□□ -0.86
UBE3B-208ENST00000538070 MTMR9Q96QG7 549 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 PNKPQ96T60 521 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 IFIH1Q9BYX4 1025 aaKnown RBP9.65□□□□□ -0.86
UBE3B-208ENST00000538070 PCDHB13Q9Y5F0 798 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 LRRC10BA6NIK2 292 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 RSPH10B2B2RC85 870 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 MED24O75448 989 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 RSPH10BP0C881 870 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 H2AFXP16104 143 aaPredicted RBP9.65□□□□□ -0.86
UBE3B-208ENST00000538070 ARHGAP25P42331 645 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 HERVK_113P62684 666 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 CT47A1Q5JQC4 288 aaPredicted RBP9.65□□□□□ -0.86
UBE3B-208ENST00000538070 PODNQ7Z5L7 613 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 GPR161Q8N6U8 529 aaKnown RBP9.65□□□□□ -0.86
UBE3B-208ENST00000538070 CEP112Q8N8E3 955 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 AMNQ9BXJ7 453 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 BHMT2Q9H2M3 363 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 FBXO28Q9NVF7 368 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 FHOD1Q9Y613 1164 aa9.65□□□□□ -0.86
UBE3B-208ENST00000538070 MYH8P13535 1937 aa9.65□□□□□ -0.87
UBE3B-208ENST00000538070 SASH3O75995 380 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 BMP3P12645 472 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 OAS2P29728 719 aaKnown RBP9.64□□□□□ -0.87
UBE3B-208ENST00000538070 KRT83P78385 493 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 GFPT1Q06210 699 aaPredicted RBP9.64□□□□□ -0.87
UBE3B-208ENST00000538070 ADAM9Q13443 819 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 LONRF2Q1L5Z9 754 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 CC2D1AQ6P1N0 951 aaPredicted RBP9.64□□□□□ -0.87
UBE3B-208ENST00000538070 CCDC65Q8IXS2 484 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 CUEDC2Q9H467 287 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 SEPT11Q9NVA2 429 aaKnown RBP9.64□□□□□ -0.87
UBE3B-208ENST00000538070 CAPN11Q9UMQ6 739 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 SAMM50Q9Y512 469 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.64□□□□□ -0.87
UBE3B-208ENST00000538070 MORC2Q9Y6X9 1032 aaPredicted RBP9.64□□□□□ -0.87
UBE3B-208ENST00000538070 EDIL3O43854 480 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 GCNT3O95395 438 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 MAGEA1P43355 309 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 CCDC181Q5TID7 509 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 OGFOD1Q8N543 542 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 ABCB6Q9NP58 842 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 CCDC88AQ3V6T2 1871 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 ACTN1P12814 892 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 ZBED6P86452 979 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 SP4Q02446 784 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 C2orf54Q08AI8 447 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 SYDE2Q5VT97 1194 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 ZNF507Q8TCN5 953 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 MMS19Q96T76 1030 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 SAR1BQ9Y6B6 198 aa9.64□□□□□ -0.87
UBE3B-208ENST00000538070 A0A1W2PRG0 241 aa9.63□□□□□ -0.87
UBE3B-208ENST00000538070 PLA2G4AP47712 749 aa9.63□□□□□ -0.87
UBE3B-208ENST00000538070 VSNL1P62760 191 aa9.63□□□□□ -0.87
UBE3B-208ENST00000538070 SMC1AQ14683 1233 aaKnown RBP9.63□□□□□ -0.87
UBE3B-208ENST00000538070 MIIPQ5JXC2 388 aa9.63□□□□□ -0.87
UBE3B-208ENST00000538070 HHIPL2Q6UWX4 724 aa9.63□□□□□ -0.87
UBE3B-208ENST00000538070 SECISBP2LQ93073 1101 aaKnown RBP9.63□□□□□ -0.87
UBE3B-208ENST00000538070 CCDC17Q96LX7 622 aa9.63□□□□□ -0.87
UBE3B-208ENST00000538070 TMEM39BQ9GZU3 492 aa9.63□□□□□ -0.87
UBE3B-208ENST00000538070 PDE11AQ9HCR9 933 aa9.63□□□□□ -0.87
UBE3B-208ENST00000538070 EMILIN3Q9NT22 766 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms