RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	FBLN1	P23142	703 aa		7.04	□□□□□ -1.28
CD44-231	ENST00000531110	GRK2	P25098	689 aa		7.04	□□□□□ -1.28
CD44-231	ENST00000531110	GRK3	P35626	688 aa		7.04	□□□□□ -1.28
CD44-231	ENST00000531110	SYDE1	Q6ZW31	735 aa	Predicted RBP	7.04	□□□□□ -1.28
CD44-231	ENST00000531110	TMC6	Q7Z403	805 aa		7.04	□□□□□ -1.28
CD44-231	ENST00000531110	HOMER1	Q86YM7	354 aa		7.04	□□□□□ -1.28
CD44-231	ENST00000531110	PHOSPHO1	Q8TCT1	267 aa		7.04	□□□□□ -1.28
CD44-231	ENST00000531110	PDGFD	Q9GZP0	370 aa	Predicted RBP	7.04	□□□□□ -1.28
CD44-231	ENST00000531110	DBR1	Q9UK59	544 aa	Known RBP	7.04	□□□□□ -1.28
CD44-231	ENST00000531110	ASXL2	Q76L83	1435 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	ZC3H12D	A2A288	527 aa	Known RBP	7.03	□□□□□ -1.28
CD44-231	ENST00000531110	BLACE	A4D250	179 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	FAM47E-STBD1	D6RA91	191 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	N4BP3	O15049	544 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	RFPL3	O75679	317 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	TMEM253	P0C7T8	217 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	TNNT2	P45379	298 aa	Predicted RBP	7.03	□□□□□ -1.28
CD44-231	ENST00000531110	DLG4	P78352	724 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	PRR5	P85299	388 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	PAK1	Q13153	545 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	TARBP2	Q15633	366 aa	Known RBP	7.03	□□□□□ -1.28
CD44-231	ENST00000531110	HABP4	Q5JVS0	413 aa	Known RBP	7.03	□□□□□ -1.28
CD44-231	ENST00000531110	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	7.03	□□□□□ -1.28
CD44-231	ENST00000531110	PANK1	Q8TE04	598 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	CPA5	Q8WXQ8	436 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	CHAMP1	Q96JM3	812 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	CNTD2	Q9H8S5	307 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	GCM1	Q9NP62	436 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	TMEM51	Q9NW97	253 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	BTG4	Q9NY30	223 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	SFMBT1	Q9UHJ3	866 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	NUB1	Q9Y5A7	615 aa		7.03	□□□□□ -1.28
CD44-231	ENST00000531110	KRIT1	O00522	736 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	NFIB	O00712	420 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	ENPP3	O14638	875 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	HGS	O14964	777 aa	Predicted RBP	7.02	□□□□□ -1.29
CD44-231	ENST00000531110	TADA3	O75528	432 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	SOD2	P04179	222 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	KRT1	P04264	644 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	PKN1	Q16512	942 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	TMEM132E	Q6IEE7	984 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	LDHD	Q86WU2	507 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	7.02	□□□□□ -1.29
CD44-231	ENST00000531110	APPBP2	Q92624	585 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	KCNN1	Q92952	543 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	KRTAP4-8	Q9BYQ9	185 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	SLC52A2	Q9HAB3	445 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	SLC6A20	Q9NP91	592 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	CD320	Q9NPF0	282 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	TBX22	Q9Y458	520 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	PCDHA5	Q9Y5H7	936 aa		7.02	□□□□□ -1.29
CD44-231	ENST00000531110	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	7.01	□□□□□ -1.29
CD44-231	ENST00000531110	ETV2	O00321	342 aa	Predicted RBP	7.01	□□□□□ -1.29
CD44-231	ENST00000531110	IRS4	O14654	1257 aa	Predicted RBP	7.01	□□□□□ -1.29
CD44-231	ENST00000531110	GSTA4	O15217	222 aa		7.01	□□□□□ -1.29
CD44-231	ENST00000531110	SGSM2	O43147	1006 aa		7.01	□□□□□ -1.29
CD44-231	ENST00000531110	NPTXR	O95502	500 aa		7.01	□□□□□ -1.29
CD44-231	ENST00000531110	PFKL	P17858	780 aa		7.01	□□□□□ -1.29
CD44-231	ENST00000531110	SPIRE1	Q08AE8	756 aa		7.01	□□□□□ -1.29
CD44-231	ENST00000531110	TCEA2	Q15560	299 aa		7.01	□□□□□ -1.29
CD44-231	ENST00000531110	ZNF648	Q5T619	568 aa	Predicted RBP	7.01	□□□□□ -1.29
CD44-231	ENST00000531110	C16orf86	Q6ZW13	317 aa		7.01	□□□□□ -1.29
CD44-231	ENST00000531110	MTDH	Q86UE4	582 aa	Known RBP	7.01	□□□□□ -1.29
CD44-231	ENST00000531110	JAZF1	Q86VZ6	243 aa		7.01	□□□□□ -1.29
CD44-231	ENST00000531110	MIB1	Q86YT6	1006 aa		7.01	□□□□□ -1.29
CD44-231	ENST00000531110	MZB1	Q8WU39	189 aa		7.01	□□□□□ -1.29
CD44-231	ENST00000531110	SMOC1	Q9H4F8	434 aa		7.01	□□□□□ -1.29
CD44-231	ENST00000531110	PCDH18	Q9HCL0	1135 aa		7.01	□□□□□ -1.29
CD44-231	ENST00000531110	NGRN	Q9NPE2	291 aa	Known RBP	7.01	□□□□□ -1.29
CD44-231	ENST00000531110	TRAF6	Q9Y4K3	522 aa		7.01	□□□□□ -1.29
CD44-231	ENST00000531110	TTC36	A6NLP5	189 aa		7	□□□□□ -1.29
CD44-231	ENST00000531110	NCAM1	P13591	858 aa		7	□□□□□ -1.29
CD44-231	ENST00000531110	IGFBP6	P24592	240 aa	Predicted RBP	7	□□□□□ -1.29
CD44-231	ENST00000531110	CDR1	P51861	262 aa		7	□□□□□ -1.29
CD44-231	ENST00000531110	GUCY1A3	Q02108	690 aa		7	□□□□□ -1.29
CD44-231	ENST00000531110	STEAP3	Q658P3	488 aa		7	□□□□□ -1.29
CD44-231	ENST00000531110	OTOP3	Q7RTS5	596 aa		7	□□□□□ -1.29
CD44-231	ENST00000531110	AMIGO3	Q86WK7	504 aa		7	□□□□□ -1.29
CD44-231	ENST00000531110	TRIM48	Q8IWZ4	208 aa		7	□□□□□ -1.29
CD44-231	ENST00000531110	TTLL11	Q8NHH1	800 aa		7	□□□□□ -1.29
CD44-231	ENST00000531110	SLC7A14	Q8TBB6	771 aa		7	□□□□□ -1.29
CD44-231	ENST00000531110	GTPBP4	Q9BZE4	634 aa	Known RBP	7	□□□□□ -1.29
CD44-231	ENST00000531110	KANSL2	Q9H9L4	492 aa		7	□□□□□ -1.29
CD44-231	ENST00000531110	TRIM39	Q9HCM9	518 aa		7	□□□□□ -1.29
CD44-231	ENST00000531110	GEMIN8	Q9NWZ8	242 aa	Known RBP	7	□□□□□ -1.29
CD44-231	ENST00000531110	ESYT3	A0FGR9	886 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	TLDC2	A0PJX2	215 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	TCAF2	A6NFQ2	919 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	LETM1	O95202	739 aa	Predicted RBP	6.99	□□□□□ -1.29
CD44-231	ENST00000531110	CRTAM	O95727	393 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	C8A	P07357	584 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	RAP1GAP	P47736	663 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	ANAPC15	P60006	121 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	ZNF200	P98182	395 aa	Predicted RBP	6.99	□□□□□ -1.29
CD44-231	ENST00000531110	CAP1	Q01518	475 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	GPATCH11	Q8N954	259 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	PCDH19	Q8TAB3	1148 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	UHMK1	Q8TAS1	419 aa	Known RBP	6.99	□□□□□ -1.29
CD44-231	ENST00000531110	ALG3	Q92685	438 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	SIGLEC10	Q96LC7	697 aa		6.99	□□□□□ -1.29

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