RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 OSBPL7Q9BZF2 842 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 MIS12Q9H081 205 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 RETREG1Q9H6L5 497 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 PREBQ9HCU5 417 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 HELLSQ9NRZ9 838 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 EXOC1Q9NV70 894 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 L3MBTL1Q9Y468 752 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 SNX14Q9Y5W7 946 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 ADCY9O60503 1353 aa6.4□□□□□ -1.39
CD44-225ENST00000527326 CEMIPQ8WUJ3 1361 aa6.4□□□□□ -1.39
CD44-225ENST00000527326 OVOS2A0A0G2JMS6 1433 aa6.4□□□□□ -1.39
CD44-225ENST00000527326 OVOS2A0A0J9YW53 1432 aa6.4□□□□□ -1.39
CD44-225ENST00000527326 OVOS2Q6IE36 1432 aa6.4□□□□□ -1.39
CD44-225ENST00000527326 ATP10DQ9P241 1426 aa6.4□□□□□ -1.39
CD44-225ENST00000527326 A0A1B0GTH6 734 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 CCDC162PA2VCL2 907 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 GMNCA6NCL1 334 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 TMEM110-MUSTN1A8MSY1 372 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 E7EVH7 732 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 OPLAHO14841 1288 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 P4HA2O15460 535 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 STAU1O95793 577 aaKnown RBP6.39□□□□□ -1.39
CD44-225ENST00000527326 SERPINC1P01008 464 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 CLTAP09496 248 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 ATP2A2P16615 1042 aaKnown RBP6.39□□□□□ -1.39
CD44-225ENST00000527326 NR1D1P20393 614 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 ATP6V1C1P21283 382 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 SP100P23497 879 aaPredicted RBP6.39□□□□□ -1.39
CD44-225ENST00000527326 TNFRSF8P28908 595 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 MLH1P40692 756 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 CD97P48960 835 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 USP11P51784 963 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 EPHB4P54760 987 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 POLE2P56282 527 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 MRPS25P82663 173 aaKnown RBP6.39□□□□□ -1.39
CD44-225ENST00000527326 AMPD2Q01433 879 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 KLC1Q07866 573 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 KARSQ15046 597 aaKnown RBP6.39□□□□□ -1.39
CD44-225ENST00000527326 ANKRD1Q15327 319 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 INAQ16352 499 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 CFAP100Q494V2 611 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 TTMPQ5BVD1 217 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 ZNF569Q5MCW4 686 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 GKAP1Q5VSY0 366 aaPredicted RBP6.39□□□□□ -1.39
CD44-225ENST00000527326 CREB3L3Q68CJ9 461 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 THOC7Q6I9Y2 204 aaKnown RBP6.39□□□□□ -1.39
CD44-225ENST00000527326 GPAT2Q6NUI2 795 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 IRGCQ6NXR0 463 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 LRRC49Q8IUZ0 686 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 PEX5LQ8IYB4 626 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 PGBD3Q8N328 593 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 STKLD1Q8NE28 680 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 ENGASEQ8NFI3 743 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 AGAP11Q8TF27 550 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 IRGQQ8WZA9 623 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 CCT6BQ92526 530 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 NCSTNQ92542 709 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 CAVIN3Q969G5 261 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 TRIM11Q96F44 468 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 ZMAT2Q96NC0 199 aaKnown RBP6.39□□□□□ -1.39
CD44-225ENST00000527326 FHDC1Q9C0D6 1143 aaPredicted RBP6.39□□□□□ -1.39
CD44-225ENST00000527326 RABEP2Q9H5N1 569 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 HYPKQ9NX55 129 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 RABL2BQ9UNT1 228 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 SLC12A4Q9UP95 1085 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 CEP131Q9UPN4 1083 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 ITM2BQ9Y287 266 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 LRRC42Q9Y546 428 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 HRH3Q9Y5N1 445 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 DNMT3AQ9Y6K1 912 aaPredicted RBP6.39□□□□□ -1.39
CD44-225ENST00000527326 KIAA0232Q92628 1395 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 MAST1Q9Y2H9 1570 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 STRCQ7RTU9 1775 aa6.39□□□□□ -1.39
CD44-225ENST00000527326 A0A1W2PQ27 194 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 A0A1W2PQ64 194 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 A0A1W2PQD8 194 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 IFIT3O14879 490 aaKnown RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 PRPF3O43395 683 aaKnown RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 MMEP08473 750 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 ACADSP16219 412 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 GBP1P32455 592 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 PDE6BP35913 854 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 STAT6P42226 847 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 ARPC4P59998 168 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 LACTBP83111 547 aaPredicted RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 ATP11AP98196 1134 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 MYL5Q02045 173 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 FOXD4Q12950 439 aaPredicted RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 RESTQ13127 1097 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 BYSLQ13895 437 aaKnown RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 MAP7Q14244 749 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 ITIH4Q14624 930 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 NCAPHQ15003 741 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 MAP7D1Q3KQU3 841 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 C4orf17Q53FE4 359 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 CFAP157Q5JU67 520 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 CFAP58Q5T655 872 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 ANO7Q6IWH7 933 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 NAA16Q6N069 864 aaPredicted RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 PI16Q6UXB8 463 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms