RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 NHEJ1Q9H9Q4 299 aaPredicted RBP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 NOP53Q9NZM5 478 aaKnown RBP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 ZFATQ9P243 1243 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 CEP131Q9UPN4 1083 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 BTBD19C9JJ37 291 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 OPLAHO14841 1288 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 EYA4O95677 639 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 KRT14P02533 472 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 GNAQP50148 359 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 DRG2P55039 364 aaKnown RBP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 TFCP2Q12800 502 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 SNX1Q13596 522 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 RALYLQ86SE5 291 aaKnown RBP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 GIMAP8Q8ND71 665 aaPredicted RBP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 STAMBPL1Q96FJ0 436 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 ALG1Q9BT22 464 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 TACC3Q9Y6A5 838 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 TANC1Q9C0D5 1861 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 MACROD2A1Z1Q3 448 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 ANXA1P04083 346 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 ATP4AP20648 1035 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 IARSP41252 1262 aaKnown RBP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 ANO7Q6IWH7 933 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 CYB5R4Q7L1T6 521 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 USHBP1Q8N6Y0 703 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 WASF1Q92558 559 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 EPB41L1Q9H4G0 881 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 MAGEF1Q9HAY2 307 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 CWC25Q9NXE8 425 aaPredicted RBP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 NQO1P15559 274 aaKnown RBP9.21□□□□□ -0.93
CSMD1-213ENST00000523488 ANXA13P27216 316 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 CYLC1P35663 651 aaPredicted RBP9.21□□□□□ -0.93
CSMD1-213ENST00000523488 HSD17B3P37058 310 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 TRAPPC10P48553 1259 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 MARSP56192 900 aaKnown RBP9.21□□□□□ -0.93
CSMD1-213ENST00000523488 SAFBQ15424 915 aaKnown RBP eCLIP9.21□□□□□ -0.93
CSMD1-213ENST00000523488 SLC30A9Q6PML9 568 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 DDX46Q7L014 1031 aaKnown RBP9.21□□□□□ -0.93
CSMD1-213ENST00000523488 AGAP11Q8TF27 550 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 DBNDD2Q9BQY9 259 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 RBM12Q9NTZ6 932 aaKnown RBP9.21□□□□□ -0.93
CSMD1-213ENST00000523488 RGL1Q9NZL6 768 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 CNOT7Q9UIV1 285 aaKnown RBP9.21□□□□□ -0.93
CSMD1-213ENST00000523488 NDUFB9Q9Y6M9 179 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 PPP1R2P41236 205 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 AFMP43652 599 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 EIF3BP55884 814 aaKnown RBP9.21□□□□□ -0.93
CSMD1-213ENST00000523488 EHHADHQ08426 723 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 DIXDC1Q155Q3 683 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 C8orf74Q6P047 294 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 CCDC63Q8NA47 563 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 TIPINQ9BVW5 301 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 CSRNP2Q9H175 543 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 GPHNQ9NQX3 736 aaPredicted RBP9.21□□□□□ -0.93
CSMD1-213ENST00000523488 LMCD1Q9NZU5 365 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 SWAP70Q9UH65 585 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 SALL4Q9UJQ4 1053 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 PCDHA3Q9Y5H8 950 aa9.21□□□□□ -0.93
CSMD1-213ENST00000523488 ZNFX1Q9P2E3 1918 aaKnown RBP9.21□□□□□ -0.94
CSMD1-213ENST00000523488 STXBP3O00186 592 aa9.21□□□□□ -0.94
CSMD1-213ENST00000523488 FGAP02671 866 aa9.21□□□□□ -0.94
CSMD1-213ENST00000523488 ATP6V1C1P21283 382 aa9.21□□□□□ -0.94
CSMD1-213ENST00000523488 KIF5BP33176 963 aa9.21□□□□□ -0.94
CSMD1-213ENST00000523488 PAPOLAP51003 745 aaKnown RBP9.21□□□□□ -0.94
CSMD1-213ENST00000523488 RBM5P52756 815 aaKnown RBP eCLIP9.21□□□□□ -0.94
CSMD1-213ENST00000523488 MCCD1P59942 119 aaPredicted RBP9.21□□□□□ -0.94
CSMD1-213ENST00000523488 MRPS35P82673 323 aaKnown RBP9.21□□□□□ -0.94
CSMD1-213ENST00000523488 THEMIS2Q5TEJ8 643 aa9.21□□□□□ -0.94
CSMD1-213ENST00000523488 GKAP1Q5VSY0 366 aaPredicted RBP9.21□□□□□ -0.94
CSMD1-213ENST00000523488 ARL6IP4Q66PJ3 421 aaKnown RBP9.21□□□□□ -0.94
CSMD1-213ENST00000523488 CACNA2D4Q7Z3S7 1137 aa9.21□□□□□ -0.94
CSMD1-213ENST00000523488 ATP8B4Q8TF62 1192 aa9.21□□□□□ -0.94
CSMD1-213ENST00000523488 APPBP2Q92624 585 aa9.21□□□□□ -0.94
CSMD1-213ENST00000523488 SETDB2Q96T68 719 aa9.21□□□□□ -0.94
CSMD1-213ENST00000523488 ARHGAP20Q9P2F6 1191 aa9.21□□□□□ -0.94
CSMD1-213ENST00000523488 CIDEBQ9UHD4 219 aa9.21□□□□□ -0.94
CSMD1-213ENST00000523488 ANAPC4Q9UJX5 808 aa9.21□□□□□ -0.94
CSMD1-213ENST00000523488 LUC7L2Q9Y383 392 aaKnown RBP9.21□□□□□ -0.94
CSMD1-213ENST00000523488 SMIM24O75264 130 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 CARSP49589 748 aaKnown RBP9.2□□□□□ -0.94
CSMD1-213ENST00000523488 PKN1Q16512 942 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 GNPTABQ3T906 1256 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 AMOTQ4VCS5 1084 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 BTNL9Q6UXG8 535 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 LRRC57Q8N9N7 239 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 TBC1D5Q92609 795 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 PLEKHG4BQ96PX9 1271 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 ZDHHC18Q9NUE0 388 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 AGAP1Q9UPQ3 857 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 GUCY2FP51841 1108 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 PAK1Q13153 545 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 MTMR3Q13615 1198 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 SPA17Q15506 151 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 RGS9BPQ6ZS82 235 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 SPATA21Q7Z572 469 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 TMC3Q7Z5M5 1100 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 GRAMD1CQ8IYS0 662 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 GBP7Q8N8V2 638 aaPredicted RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms