RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 BACH2Q9BYV9 841 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 TCFL5Q9UL49 500 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 ZNF281Q9Y2X9 895 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 KIAA0232Q92628 1395 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 CACNA1GO43497 2377 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 KIF1AQ12756 1690 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 ACEP12821 1306 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 TEX51A0A1B0GUA7 166 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 RRP9O43818 475 aaKnown RBP7.1□□□□□ -1.27
NUP54-218ENST00000515460 SEMA7AO75326 666 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 EFEMP2O95967 443 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 SDHBP21912 280 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 PLA2G5P39877 138 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 PCBP3P57721 371 aaKnown RBP7.1□□□□□ -1.27
NUP54-218ENST00000515460 MAP2K1Q02750 393 aaPredicted RBP7.1□□□□□ -1.27
NUP54-218ENST00000515460 SNW1Q13573 536 aaKnown RBP7.1□□□□□ -1.27
NUP54-218ENST00000515460 ZPBP2Q6X784 338 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 CEP128Q6ZU80 1094 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 NLRC3Q7RTR2 1065 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 SLITRK4Q8IW52 837 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 RNF34Q969K3 372 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 ZNF512BQ96KM6 892 aaPredicted RBP7.1□□□□□ -1.27
NUP54-218ENST00000515460 CNNM2Q9H8M5 875 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 TFCP2L1Q9NZI6 479 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 TUBGCP6Q96RT7 1819 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 ATP7BP35670 1465 aa7.1□□□□□ -1.27
NUP54-218ENST00000515460 TNRC6CQ9HCJ0 1690 aaKnown RBP7.09□□□□□ -1.27
NUP54-218ENST00000515460 OR14I1A6ND48 311 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 B8ZZF3 427 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 SYPP08247 313 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 BMP7P18075 431 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 EVA1CP58658 441 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 FANCCQ00597 558 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 CLCQ05315 142 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 NBPF9Q3BBW0 867 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 NBPF12Q5TAG4 269 aaPredicted RBP7.09□□□□□ -1.27
NUP54-218ENST00000515460 NLRX1Q86UT6 975 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 ZNF655Q8N720 491 aaPredicted RBP7.09□□□□□ -1.27
NUP54-218ENST00000515460 MARCH10Q8NA82 808 aaPredicted RBP7.09□□□□□ -1.27
NUP54-218ENST00000515460 DAGLBQ8NCG7 672 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 IPO4Q8TEX9 1081 aaKnown RBP7.09□□□□□ -1.27
NUP54-218ENST00000515460 ATG4CQ96DT6 458 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 GCM1Q9NP62 436 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 MINPP1Q9UNW1 487 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 KCTD3Q9Y597 815 aa7.09□□□□□ -1.27
NUP54-218ENST00000515460 EIF3AQ14152 1382 aaKnown RBP7.08□□□□□ -1.28
NUP54-218ENST00000515460 TMEM82A0PJX8 343 aa7.08□□□□□ -1.28
NUP54-218ENST00000515460 MEIS3P2A8K0S8 358 aa7.08□□□□□ -1.28
NUP54-218ENST00000515460 CLEC3AO75596 197 aa7.08□□□□□ -1.28
NUP54-218ENST00000515460 PRAMEF1O95521 474 aa7.08□□□□□ -1.28
NUP54-218ENST00000515460 IMPDH2P12268 514 aa7.08□□□□□ -1.28
NUP54-218ENST00000515460 VAMP1P23763 118 aa7.08□□□□□ -1.28
NUP54-218ENST00000515460 CTSWP56202 376 aa7.08□□□□□ -1.28
NUP54-218ENST00000515460 SRSF3P84103 164 aaKnown RBP7.08□□□□□ -1.28
NUP54-218ENST00000515460 LDLRAD1Q5T700 205 aa7.08□□□□□ -1.28
NUP54-218ENST00000515460 SMIM5Q71RC9 77 aa7.08□□□□□ -1.28
NUP54-218ENST00000515460 MAP6Q96JE9 813 aa7.08□□□□□ -1.28
NUP54-218ENST00000515460 BRCA2P51587 3418 aa7.08□□□□□ -1.28
NUP54-218ENST00000515460 POLR3AO14802 1390 aaPredicted RBP7.08□□□□□ -1.28
NUP54-218ENST00000515460 MEIS1O00470 390 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 PRRG2O14669 202 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 GCP02774 474 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 VEGFAP15692 232 aaPredicted RBP7.07□□□□□ -1.28
NUP54-218ENST00000515460 SSPNQ14714 243 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 ZNF385BQ569K4 471 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 FAM122AQ96E09 287 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 EAF1Q96JC9 268 aaPredicted RBP7.07□□□□□ -1.28
NUP54-218ENST00000515460 HHIPL1Q96JK4 782 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 KRTAP4-2Q9BYR5 136 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 PRDM14Q9GZV8 571 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 ZCCHC4Q9H5U6 513 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 SIRT5Q9NXA8 310 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 RNF181Q9P0P0 153 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 SSH2Q76I76 1423 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 PKD1L3Q7Z443 1732 aa7.07□□□□□ -1.28
NUP54-218ENST00000515460 PARP4Q9UKK3 1724 aaKnown RBP7.07□□□□□ -1.28
NUP54-218ENST00000515460 WDR33Q9C0J8 1336 aaKnown RBP7.06□□□□□ -1.28
NUP54-218ENST00000515460 SCAMP3O14828 347 aaKnown RBP7.06□□□□□ -1.28
NUP54-218ENST00000515460 NRDCO43847 1150 aa7.06□□□□□ -1.28
NUP54-218ENST00000515460 NME1P15531 152 aaKnown RBP7.06□□□□□ -1.28
NUP54-218ENST00000515460 NCLP19338 710 aaKnown RBP7.06□□□□□ -1.28
NUP54-218ENST00000515460 HOXA5P20719 270 aa7.06□□□□□ -1.28
NUP54-218ENST00000515460 KIR2DL1P43626 348 aaPredicted RBP7.06□□□□□ -1.28
NUP54-218ENST00000515460 KIR2DL2P43627 348 aaPredicted RBP7.06□□□□□ -1.28
NUP54-218ENST00000515460 COL23A1Q86Y22 540 aaPredicted RBP7.06□□□□□ -1.28
NUP54-218ENST00000515460 DHX37Q8IY37 1157 aaKnown RBP7.06□□□□□ -1.28
NUP54-218ENST00000515460 LINC00116Q8NCU8 138 aa7.06□□□□□ -1.28
NUP54-218ENST00000515460 NAP1L2Q9ULW6 460 aaPredicted RBP7.06□□□□□ -1.28
NUP54-218ENST00000515460 TRPM3Q9HCF6 1732 aaPredicted RBP7.06□□□□□ -1.28
NUP54-218ENST00000515460 PLEKHG2Q9H7P9 1386 aa7.06□□□□□ -1.28
NUP54-218ENST00000515460 RGPD8O14715 1765 aaPredicted RBP7.05□□□□□ -1.28
NUP54-218ENST00000515460 NCANO14594 1321 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 TNFRSF10CO14798 259 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 RTP1P59025 263 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 GRM1Q13255 1194 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 DDB1Q16531 1140 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 BBS9Q3SYG4 887 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 ZNF394Q53GI3 561 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 TCERG1LQ5VWI1 586 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 PANK1Q8TE04 598 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms