RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 ARHGEF35A5YM69 484 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 KRT19P08727 400 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 KRT13P13646 458 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 PDE6AP16499 860 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 EN2P19622 333 aaPredicted RBP3.28□□□□□ -1.88
NEDD4-208ENST00000508342 LACTBP83111 547 aaPredicted RBP3.28□□□□□ -1.88
NEDD4-208ENST00000508342 NFX1Q12986 1120 aaKnown RBP3.28□□□□□ -1.88
NEDD4-208ENST00000508342 MAP2K5Q13163 448 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 THEM5Q8N1Q8 247 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 PAIP2Q9BPZ3 127 aaKnown RBP3.28□□□□□ -1.88
NEDD4-208ENST00000508342 LMCD1Q9NZU5 365 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 EPS15L1Q9UBC2 864 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 ORC3Q9UBD5 711 aaPredicted RBP3.28□□□□□ -1.88
NEDD4-208ENST00000508342 DOCK1Q14185 1865 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 SPDYE5A6NIY4 337 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 SEPT4O43236 478 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 EIF2AK2P19525 551 aaKnown RBP3.28□□□□□ -1.88
NEDD4-208ENST00000508342 HOXA13P31271 388 aaPredicted RBP3.28□□□□□ -1.88
NEDD4-208ENST00000508342 ACVR2BQ13705 512 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 KIAA1328Q86T90 577 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 PLA2G4DQ86XP0 818 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 TPH2Q8IWU9 490 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 PGBD3Q8N328 593 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 ATP6V0A1Q93050 837 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 ZNF302Q9NR11 478 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 PCDHB9Q9Y5E1 797 aa3.28□□□□□ -1.88
NEDD4-208ENST00000508342 YDJCA8MPS7 323 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 NKRFO15226 690 aaKnown RBP eCLIP3.28□□□□□ -1.89
NEDD4-208ENST00000508342 CCDC172P0C7W6 258 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 SDSP20132 328 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 SFPQP23246 707 aaKnown RBP eCLIP3.28□□□□□ -1.89
NEDD4-208ENST00000508342 ADD2P35612 726 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 MNX1P50219 401 aaPredicted RBP3.28□□□□□ -1.89
NEDD4-208ENST00000508342 CCL23P55773 120 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 PPFIA1Q13136 1202 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 FSCN1Q16658 493 aaKnown RBP3.28□□□□□ -1.89
NEDD4-208ENST00000508342 PRR16Q569H4 304 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 LARP1BQ659C4 914 aaKnown RBP3.28□□□□□ -1.89
NEDD4-208ENST00000508342 MCTP2Q6DN12 878 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 RCSD1Q6JBY9 416 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 CES5AQ6NT32 575 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 Q6ZUG5 572 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 CCDC84Q86UT8 332 aaPredicted RBP3.28□□□□□ -1.89
NEDD4-208ENST00000508342 PNMA1Q8ND90 353 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 PAWRQ96IZ0 340 aaKnown RBP3.28□□□□□ -1.89
NEDD4-208ENST00000508342 RMDN3Q96TC7 470 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 RPF1Q9H9Y2 349 aaKnown RBP3.28□□□□□ -1.89
NEDD4-208ENST00000508342 CACYBPQ9HB71 228 aaKnown RBP3.28□□□□□ -1.89
NEDD4-208ENST00000508342 HMG20BQ9P0W2 317 aa3.28□□□□□ -1.89
NEDD4-208ENST00000508342 GOLGA6L7A0A1B0GV03 622 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 C2CD2LO14523 706 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 CYP2E1P05181 493 aaPredicted RBP3.27□□□□□ -1.89
NEDD4-208ENST00000508342 VIMP08670 466 aaKnown RBP3.27□□□□□ -1.89
NEDD4-208ENST00000508342 CLCN1P35523 988 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 CCT6AP40227 531 aaKnown RBP3.27□□□□□ -1.89
NEDD4-208ENST00000508342 CALCRLQ16602 461 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 CCDC157Q569K6 752 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 RNF187Q5TA31 235 aaPredicted RBP3.27□□□□□ -1.89
NEDD4-208ENST00000508342 HAUS6Q7Z4H7 955 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 CSGALNACT1Q8TDX6 532 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 PGBD4Q96DM1 585 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 PLVAPQ9BX97 442 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 UPF3BQ9BZI7 483 aaKnown RBP3.27□□□□□ -1.89
NEDD4-208ENST00000508342 GDPD2Q9HCC8 539 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 PIH1D3Q9NQM4 214 aaKnown RBP3.27□□□□□ -1.89
NEDD4-208ENST00000508342 DDX25Q9UHL0 483 aaKnown RBP3.27□□□□□ -1.89
NEDD4-208ENST00000508342 MYH4Q9Y623 1939 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 SLC15A5A6NIM6 579 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 H0YHG0 523 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 IRF6O14896 467 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 MAP3K13O43283 966 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 TADA2AO75478 443 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 CABYRO75952 493 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 CYP2D6P10635 497 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 TMEM62Q0P6H9 643 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 LETM2Q2VYF4 491 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 TMEM259Q4ZIN3 620 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 ARHGAP15Q53QZ3 475 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 XKR9Q5GH70 373 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 TWF2Q6IBS0 349 aaKnown RBP3.27□□□□□ -1.89
NEDD4-208ENST00000508342 STAG1Q8WVM7 1258 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 ATP6V0A4Q9HBG4 840 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 RPTORQ8N122 1335 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 SNAP23O00161 211 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 PPP1R12AO14974 1030 aaPredicted RBP3.27□□□□□ -1.89
NEDD4-208ENST00000508342 CCP110O43303 1012 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 LRG1P02750 347 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 ZNF286BP0CG31 522 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 CAPN2P17655 700 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 SP100P23497 879 aaPredicted RBP3.27□□□□□ -1.89
NEDD4-208ENST00000508342 ALDH7A1P49419 539 aaKnown RBP3.27□□□□□ -1.89
NEDD4-208ENST00000508342 GABPAQ06546 454 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 TRPC3Q13507 836 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 MTMR1Q13613 665 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 SPA17Q15506 151 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 CLUL1Q15846 466 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 DLK2Q6UY11 383 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 TLK2Q86UE8 772 aa3.27□□□□□ -1.89
NEDD4-208ENST00000508342 FBXO16Q8IX29 292 aaPredicted RBP3.27□□□□□ -1.89
NEDD4-208ENST00000508342 PARP9Q8IXQ6 854 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms