RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 MYOCDQ8IZQ8 938 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 ACRBPQ8NEB7 543 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 HAS1Q92839 578 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 CEP63Q96MT8 703 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 SEMA6BQ9H3T3 888 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 SLC39A2Q9NP94 309 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 KCNMB3Q9NPA1 279 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 PITPNM2Q9BZ72 1349 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 DDTLA6NHG4 134 aaPredicted RBP13.31□□□□□ -0.28
NUP54-202ENST00000502850 EIF3CLB5ME19 914 aaKnown RBP13.31□□□□□ -0.28
NUP54-202ENST00000502850 EDIL3O43854 480 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 CLCN6P51797 869 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 CHMP4BP1P59074 171 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 FAM193AP78312 1265 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 Q4G0T1 1027 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 SYDE2Q5VT97 1194 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 BTNL9Q6UXG8 535 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 PPP4R3CPQ6ZMV5 832 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 FBXO11Q86XK2 927 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 EIF3CQ99613 913 aaKnown RBP13.31□□□□□ -0.28
NUP54-202ENST00000502850 SLF1Q9BQI6 1058 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 ARHGEF10LQ9HCE6 1279 aa13.31□□□□□ -0.28
NUP54-202ENST00000502850 SPDYE4A6NLX3 237 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 F5H6K3 240 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 RAD21O60216 631 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 BMP3P12645 472 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 HNRNPH3P31942 346 aaKnown RBP13.3□□□□□ -0.28
NUP54-202ENST00000502850 ARHGAP25P42331 645 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 MMP14P50281 582 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 FKBP3Q00688 224 aaKnown RBP13.3□□□□□ -0.28
NUP54-202ENST00000502850 RASSF7Q02833 373 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 KLRC3Q07444 240 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 COASYQ13057 564 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 MIIPQ5JXC2 388 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 FAM26FQ5R3K3 315 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 TEX35Q5T0J7 233 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 DYMQ7RTS9 669 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 KIAA1328Q86T90 577 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 ZFPM1Q8IX07 1006 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 SLC35F6Q8N357 371 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 LRRN4CLQ8ND94 238 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 FAM20AQ96MK3 541 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 NUCKS1Q9H1E3 243 aaKnown RBP13.3□□□□□ -0.28
NUP54-202ENST00000502850 NDST4Q9H3R1 872 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 FAM53CQ9NYF3 392 aa13.3□□□□□ -0.28
NUP54-202ENST00000502850 ATAD5Q96QE3 1844 aa13.29□□□□□ -0.28
NUP54-202ENST00000502850 PSMD14O00487 310 aa13.29□□□□□ -0.28
NUP54-202ENST00000502850 NDUFB10O96000 172 aa13.29□□□□□ -0.28
NUP54-202ENST00000502850 LMNB1P20700 586 aa13.29□□□□□ -0.28
NUP54-202ENST00000502850 SREBF1P36956 1147 aa13.29□□□□□ -0.28
NUP54-202ENST00000502850 ARHGAP4P98171 946 aa13.29□□□□□ -0.28
NUP54-202ENST00000502850 IKQ13123 557 aaPredicted RBP13.29□□□□□ -0.28
NUP54-202ENST00000502850 BRD3Q15059 726 aa13.29□□□□□ -0.28
NUP54-202ENST00000502850 EHMT1Q9H9B1 1298 aa13.29□□□□□ -0.28
NUP54-202ENST00000502850 NMRK2Q9NPI5 230 aa13.29□□□□□ -0.28
NUP54-202ENST00000502850 PANK4Q9NVE7 773 aa13.29□□□□□ -0.28
NUP54-202ENST00000502850 HDAC9Q9UKV0 1011 aa13.29□□□□□ -0.28
NUP54-202ENST00000502850 RNF225M0QZC1 329 aaPredicted RBP13.28□□□□□ -0.28
NUP54-202ENST00000502850 PIK3CDO00329 1044 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 PLA2G4BP0C869 781 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 SPA17Q15506 151 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 SH3BP5LQ7L8J4 393 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 CRYGNQ8WXF5 182 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 DNAJC19Q96DA6 116 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 RPGRIP1Q96KN7 1286 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 CHP1Q99653 195 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 GBP3Q9H0R5 595 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 SH2D4AQ9H788 454 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 COL4A3BPQ9Y5P4 624 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 LOXHD1Q8IVV2 1947 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 CTAGE15A4D2H0 777 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 CCDC151A5D8V7 595 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 USP17L15C9J2P7 530 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 USP17L13C9JLJ4 530 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 USP17L11C9JVI0 530 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 USP17L18D6R9N7 530 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 USP17L22D6RA61 530 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 USP17L17D6RBQ6 530 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 USP17L19D6RCP7 530 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 USP17L20D6RJB6 530 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 MEIS2O14770 477 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 PPIP5K2O43314 1243 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 C21orf2O43822 256 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 USO1O60763 962 aaKnown RBP13.28□□□□□ -0.28
NUP54-202ENST00000502850 ERLIN1O75477 346 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 TOMM70O94826 608 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 KRT18P05783 430 aaKnown RBP13.28□□□□□ -0.28
NUP54-202ENST00000502850 CTAGE8P0CG41 777 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 CIITAP33076 1130 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 CACNB3P54284 484 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 CKAP4Q07065 602 aaKnown RBP13.28□□□□□ -0.28
NUP54-202ENST00000502850 USP17L24Q0WX57 530 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 AOC3Q16853 763 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 CCDC122Q5T0U0 273 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 UTP14CQ5TAP6 766 aaKnown RBP13.28□□□□□ -0.28
NUP54-202ENST00000502850 WDR59Q6PJI9 974 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 USP17L6PQ6QN14 398 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 LRRC55Q6ZSA7 311 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 CTAGE6Q86UF2 777 aa13.28□□□□□ -0.28
NUP54-202ENST00000502850 CTAGE4Q8IX94 777 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms